Journal
MICROBIOLOGY RESOURCE ANNOUNCEMENTS
Volume 8, Issue 32, Pages -Publisher
AMER SOC MICROBIOLOGY
DOI: 10.1128/MRA.00673-19
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Funding
- USDA-ARS
- USDA-APHIS
- NIH-National Institute of Allergy and Infectious Diseases (NIAID)
- CRIP (Center of Research in Influenza Pathogenesis), an NIAID [HHSN272201400008C]
- U.S. Department of Energy (DOE) [DE-AC05-06OR23100]
- USDA [DE-AC05-06OR23100]
- USDA Agricultural Research Service, ARS project [050000093-001-00-D]
- Iowa State University Veterinary Diagnostic Laboratory
- Iowa State University Presidential Interdisciplinary Research Initiative Award
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The diversity of the 8 genes of influenza A viruses (IAV) in swine reflects introductions from nonswine hosts and subsequent antigenic drift and shift. Here, we curated a data set and present a pipeline that assigns evolutionary lineage and genetic Glade to query gene segments.
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