Journal
JOURNAL OF PHYSICAL CHEMISTRY B
Volume 121, Issue 16, Pages 4048-4060Publisher
AMER CHEMICAL SOC
DOI: 10.1021/acs.jpcb.7b02906
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Funding
- National Science Foundation [OISE-0730072, OISE-1357787, DBI-0922819, CHE-1409420]
- Wayne State University Thomas C. Rumble Graduate Fellowships
- REU of the MS-PIRE program
- Wayne State University Cs C. Rumble Graduate Fellowships
- Nederlandse Organisatie voor Wetenschappelijk Onderzoek (NWO)
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2'-Deoxyguanodne (dGuo) and guanosine (Quo) are fundamental building blocks of DNA and RNA nucleic acids. In order to understand the effects of sodium cationization on the gas-phase conformations and stabilities of dGuo and Guo, infrared multiple photon dissociation (IRMPD) action spectroscopy experiments and complementary electronic structure calculations are performed. The measured IRMPD spectra of [dGuoi-Na](+) and [Guo+Na](+) are compared to calculated IR spectra predicted for the stable low-energy structures computed for these species to determine the most favorable sodium cation binding sites, identify the structures populated in the experiments, and elucidate the influence of the 2'-hydroxyl substituent on the structures and IRMPD spectral features. These results are compared with those from a previous IRMPD study of the protonated guanine nucleosides to elucidate the differences between sodium cationization and protonation on structure. Energy-resolved collision-induced dissociation (ER-CID) experiments and survival yield analyses of protonated and sodium cationized dGuo and Guo are performed to compare the effects of these cations toward activating the N-glycosidic bonds of these nucleosides. For both [dGuo+Na](+) and [Guo-FiNa](+) the gas-phase structures populated in the experiments are found to involve bidentate binding of the sodium cation to the O6 and N7 atoms of guanine, forming a 5-membered chelation ring, with guanine found in both anti and syn orientations and C2'-endo (T-2(3) or T-3(2)) puckering of the sugar. The ER-CID results, IRMPD yields and the computed Cl' N9 bond lengths indicate that sodium cationization activates the N-glycosidic bond less effectively than protonation for both dGuo and Guo. The 2'-hydroxyl substituent of Guo is found to impact the preferred structures very little except that it enables a 2'OH-3'OH hydrogen bond to be formed; and stabilizes the N-glycosidic bond relative to that of dGuo in both the sodium eaticinized and protonated complexes.
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