4.5 Article

D3GB: An Interactive Genome Browser for R, Python, and WordPress

Journal

JOURNAL OF COMPUTATIONAL BIOLOGY
Volume 24, Issue 5, Pages 447-449

Publisher

MARY ANN LIEBERT, INC
DOI: 10.1089/cmb.2016.0213

Keywords

genome browser; next generation sequencing; Python; R; visualization; WordPress

Funding

  1. Operational Programme of Youth Employment, European Social Fund (ESF), Junta de Castilla y Leon (JCyL)
  2. Spanish Ministry of Economy, Industry and Competitiveness (MINECO) [PTA2015-10483-I]

Ask authors/readers for more resources

Genome browsers are useful not only for showing final results but also for improving analysis protocols, testing data quality, and generating result drafts. Its integration in analysis pipelines allows the optimization of parameters, which leads to better results. New developments that facilitate the creation and utilization of genome browsers could contribute to improving analysis results and supporting the quick visualization of genomic data. D3 Genome Browser is an interactive genome browser that can be easily integrated in analysis protocols and shared on the Web. It is distributed as an R package, a Python module, and a WordPress plugin to facilitate its integration in pipelines and the utilization of platform capabilities. It is compatible with popular data formats such as GenBank, GFF, BED, FASTA, and VCF, and enables the exploration of genomic data with a Web browser.

Authors

I am an author on this paper
Click your name to claim this paper and add it to your profile.

Reviews

Primary Rating

4.5
Not enough ratings

Secondary Ratings

Novelty
-
Significance
-
Scientific rigor
-
Rate this paper

Recommended

No Data Available
No Data Available