4.7 Article

A new insight into diffusional escape from a biased cylindrical trap

Related references

Note: Only part of the references are listed.
Article Chemistry, Physical

Reconciling transition path time and rate measurements in reactions with large entropic barriers

Dmitrii E. Makarov

JOURNAL OF CHEMICAL PHYSICS (2017)

Article Chemistry, Physical

Mean Direct-Transit and Looping Times as Functions of the Potential Shape

Alexander M. Berezhkoyskii et al.

JOURNAL OF PHYSICAL CHEMISTRY B (2017)

Article Chemistry, Physical

Quantum Tunneling: The Longer the Path, the Less Time it Takes

Eli Pollak

JOURNAL OF PHYSICAL CHEMISTRY LETTERS (2017)

Article Physics, Multidisciplinary

Transition Path Time Distribution, Tunneling Times, Friction, and Uncertainty

Eli Pollak

PHYSICAL REVIEW LETTERS (2017)

Article Physics, Multidisciplinary

Transition paths are hot

Jan O. Daldrop et al.

Article Chemistry, Physical

Perspective: Mechanochemistry of biological and synthetic molecules

Dmitrii E. Makarov

JOURNAL OF CHEMICAL PHYSICS (2016)

Article Chemistry, Physical

Transition path time distribution and the transition path free energy barrier

Eli Pollak

PHYSICAL CHEMISTRY CHEMICAL PHYSICS (2016)

Editorial Material Multidisciplinary Sciences

Moments of excitement

Peter Wolynes

SCIENCE (2016)

Article Multidisciplinary Sciences

Direct observation of transition paths during the folding of proteins and nucleic acids

Krishna Neupane et al.

SCIENCE (2016)

Article Biochemistry & Molecular Biology

Tubulin Tail Sequences and Post-translational Modifications Regulate Closure of Mitochondrial Voltage-dependent Anion Channel (VDAC)

Kely L. Sheldon et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2015)

Article Chemistry, Physical

The mean shape of transition and first-passage paths

Won Kyu Kim et al.

JOURNAL OF CHEMICAL PHYSICS (2015)

Article Chemistry, Physical

Shapes of dominant transition paths from single-molecule force spectroscopy

Dmitrii E. Makarov

JOURNAL OF CHEMICAL PHYSICS (2015)

Article Physics, Multidisciplinary

Testing Landscape Theory for Biomolecular Processes with Single Molecule Fluorescence Spectroscopy

Katherine Truex et al.

PHYSICAL REVIEW LETTERS (2015)

Article Multidisciplinary Sciences

Structural origin of slow diffusion in protein folding

Hoi Sung Chung et al.

SCIENCE (2015)

Article Chemistry, Physical

Fast single-molecule FRET spectroscopy: theory and experiment

Hoi Sung Chung et al.

PHYSICAL CHEMISTRY CHEMICAL PHYSICS (2014)

Article Physics, Multidisciplinary

Anomalous Dynamics of DNA Hairpin Folding

R. Frederickx et al.

PHYSICAL REVIEW LETTERS (2014)

Article Multidisciplinary Sciences

Single-molecule fluorescence probes dynamics of barrier crossing

Hoi Sung Chung et al.

NATURE (2013)

Article Biochemistry & Molecular Biology

Biophysics of α-synuclein membrane interactions

Candace M. Pfefferkorn et al.

BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES (2012)

Article Biophysics

Probing Tubulin-Blocked State of VDAC by Varying Membrane Surface Charge

Philip A. Gurnev et al.

BIOPHYSICAL JOURNAL (2012)

Article Multidisciplinary Sciences

Transition paths, diffusive processes, and preequilibria of protein folding

Zhuqing Zhang et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Article Multidisciplinary Sciences

Energy landscape analysis of native folding of the prion protein yields the diffusion constant, transition path time, and rates

Hao Yu et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Article Multidisciplinary Sciences

Protein folding kinetics and thermodynamics from atomistic simulation

Stefano Piana et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Article Multidisciplinary Sciences

Single-Molecule Fluorescence Experiments Determine Protein Folding Transition Path Times

Hoi Sung Chung et al.

SCIENCE (2012)

Article Biochemistry & Molecular Biology

Tubulin-blocked state of VDAC studied by polymer and ATP partitioning

Philip A. Gurnev et al.

FEBS LETTERS (2011)

Article Chemistry, Physical

Dominant folding pathways of a peptide chain from ab initio quantum-mechanical simulations

Silvio A. Beccara et al.

JOURNAL OF CHEMICAL PHYSICS (2011)

Article Chemistry, Physical

Generating transition paths by Langevin bridges

Henri Orland

JOURNAL OF CHEMICAL PHYSICS (2011)

Article Multidisciplinary Sciences

Single-molecule fluorescence spectroscopy maps the folding landscape of a large protein

Menahem Pirchi et al.

NATURE COMMUNICATIONS (2011)

Article Chemistry, Physical

Dominant reaction pathways in protein folding: A direct validation against molecular dynamics simulations

Pietro Faccioli et al.

JOURNAL OF CHEMICAL PHYSICS (2010)

Article Chemistry, Physical

Transition times in the low-noise limit of stochastic dynamics

Sergey V. Malinin et al.

JOURNAL OF CHEMICAL PHYSICS (2010)

Article Chemistry, Physical

A harmonic transition state approximation for the duration of reactive events in complex molecular rearrangements

Srabanti Chaudhury et al.

JOURNAL OF CHEMICAL PHYSICS (2010)

Article Multidisciplinary Sciences

Experimental determination of upper bound for transition path times in protein folding from single-molecule photon-by-photon trajectories

Hoi Sung Chung et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)

Article Multidisciplinary Sciences

Tubulin binding blocks mitochondrial voltage-dependent anion channel and regulates respiration

Tatiana K. Rostovtseva et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Article Multidisciplinary Sciences

The crystal structure of mouse VDAC1 at 2.3 Å resolution reveals mechanistic insights into metabolite gating

Rachna Ujwal et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Article Physics, Multidisciplinary

Quantitative protein dynamics from dominant folding pathways

M. Sega et al.

PHYSICAL REVIEW LETTERS (2007)

Article Biophysics

Measuring the folding transition time of single RNA molecules

Tae-Hee Lee et al.

BIOPHYSICAL JOURNAL (2007)

Article Chemistry, Physical

Transition-event durations in one-dimensional activated processes

Bin W. Zhang et al.

JOURNAL OF CHEMICAL PHYSICS (2007)

Article Chemistry, Physical

Illustration of transition path theory on a collection of simple examples

Philipp Metzner et al.

JOURNAL OF CHEMICAL PHYSICS (2006)

Article Physics, Multidisciplinary

Identity of distributions of direct uphill and downhill translocation times for particles traversing membrane channels

Alexander M. Berezhkovskii et al.

PHYSICAL REVIEW LETTERS (2006)

Article Physics, Mathematical

Towards a theory of transition paths

Weinan E et al.

JOURNAL OF STATISTICAL PHYSICS (2006)

Article Multidisciplinary Sciences

Reaction coordinates and rates from transition paths

RB Best et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)

Article Chemistry, Physical

From transition paths to transition states and rate coefficients

G Hummer

JOURNAL OF CHEMICAL PHYSICS (2004)

Article Chemistry, Multidisciplinary

Two-state folding observed in individual protein molecules

E Rhoades et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2004)

Article Clinical Neurology

Involvement of alpha-synuclein in Parkinson's disease and other neurodegenerative disorders

R Kruger et al.

JOURNAL OF NEURAL TRANSMISSION (2000)