Journal
JOURNAL OF CHEMICAL INFORMATION AND MODELING
Volume 57, Issue 4, Pages 657-668Publisher
AMER CHEMICAL SOC
DOI: 10.1021/acs.jcim.6b00332
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Funding
- U.S. DOE ARPA-E [DEAR0000348]
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We propose a multiple descriptor multiple kernel (MultiDK) method for efficient molecular discovery using machine learning. We show that the MultiDK method improves both the speed and accuracy of molecular property prediction. We apply the method to the discovery of electrolyte molecules for aqueous redox flow batteries. thing multiple-type is opposed to single-type descriptors, we obtain more relevant features for machine learning. Following the principle of wisdom of the crowds; the combination of multiple-type descriptors significantly boosts prediction performance. Moreover, by employing multiple kernels more than one kernel function for a set of the input descriptors MultiDK exploits nonlinear relations between molecular structure and properties better than a linear regression approach. The multiple kernels consist of a Tanimoto similarity kernel and a-linear kernel for a set of binary descriptors and a set of nonbinary descriptors, respectively. Using MultiDK, we achieve an average performance of r(2) = 0.92 with a test set of molecules for solubility prediction. We also extend MultiDK to predict pH-dependent solubility and apply it to a set of quinone molecules with different ionizable functional groups to assess their performance as flow battery electrolytes.
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