4.6 Article

Both Intrinsic Substrate Preference and Network Context Contribute to Substrate Selection of Classical Tyrosine Phosphatases

Related references

Note: Only part of the references are listed.
Article Multidisciplinary Sciences

Phosphotyrosine Substrate Sequence Motifs for Dual Specificity Phosphatases

Bryan M. Zhao et al.

PLOS ONE (2015)

Letter Biochemical Research Methods

KinomeXplorer: an integrated platform for kinome biology studies

Heiko Horn et al.

NATURE METHODS (2014)

Review Biochemistry & Molecular Biology

HuPho: the human phosphatase portal

Susanna Liberti et al.

FEBS JOURNAL (2013)

Letter Biochemical Research Methods

mentha: a resource for browsing integrated protein-interaction networks

Alberto Calderone et al.

NATURE METHODS (2013)

Article Multidisciplinary Sciences

Nonreceptor tyrosine phosphatase Shp2 promotes adipogenesis through inhibition of p38 MAP kinase

Zhao He et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)

Article Cell Biology

The SH2 Domain Interaction Landscape

Michele Tinti et al.

CELL REPORTS (2013)

Review Biotechnology & Applied Microbiology

The protein interaction network mediated by human SH3 domains

Martina Carducci et al.

BIOTECHNOLOGY ADVANCES (2012)

Review Biochemistry & Molecular Biology

The human phosphatase interactome: An intricate family portrait

Francesca Sacco et al.

FEBS LETTERS (2012)

Article Biochemical Research Methods

The 4G10, pY20 and p-TYR-100 antibody specificity: profiling by peptide microarrays

Michele Tinti et al.

NEW BIOTECHNOLOGY (2012)

Article Biochemistry & Molecular Biology

Substrate Specificity of Protein Tyrosine Phosphatases 1B, RPTPα, SHP-1, and SHP-2

Lige Ren et al.

BIOCHEMISTRY (2011)

Article Biochemistry & Molecular Biology

Identification of New Substrates of the Protein-tyrosine Phosphatase PTP1B by Bayesian Integration of Proteome Evidence

Emanuela Ferrari et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2011)

Article Biochemistry & Molecular Biology

MINT, the molecular interaction database: 2009 update

Arnaud Ceol et al.

NUCLEIC ACIDS RESEARCH (2010)

Article Biochemistry & Molecular Biology

Multi-Harmony: detecting functional specificity from sequence alignment

Bernd W. Brandt et al.

NUCLEIC ACIDS RESEARCH (2010)

Article Biochemistry & Molecular Biology

Large-Scale Structural Analysis of the Classical Human Protein Tyrosine Phosphatome

Alastair J. Barr et al.

Article Biochemistry & Molecular Biology

Tumor Suppressor Density-enhanced Phosphatase-1 (DEP-1) Inhibits the RAS Pathway by Direct Dephosphorylation of ERK1/2 Kinases

Francesca Sacco et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2009)

Article Biochemistry & Molecular Biology

Structural Basis of Substrate Recognition by Hematopoietic Tyrosine Phosphatase

David A. y Critton et al.

BIOCHEMISTRY (2008)

Article Biochemical Research Methods

ROC analysis: applications to the classification of biological sequences and 3D structures

Paolo Sonego et al.

BRIEFINGS IN BIOINFORMATICS (2008)

Article Biochemistry & Molecular Biology

Activation of c-Src and Fyn Kinases by Protein-tyrosine Phosphatase RPTPα Is Substrate-specific and Compatible with Lipid Raft Localization

Nathalie Vacaresse et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2008)

Article Biochemistry & Molecular Biology

Linear Motif Atlas for Phosphorylation-Dependent Signaling

Martin Lee Miller et al.

SCIENCE SIGNALING (2008)

Article Biochemical Research Methods

Defining SH2 domain and PTP specificity by screening combinatorial peptide libraries

Anne-Sophie Wavreille et al.

METHODS (2007)

Article Biochemistry & Molecular Biology

Sequence harmony: detecting functional specificity from alignments

K. Anton Feenstra et al.

NUCLEIC ACIDS RESEARCH (2007)

Article Biochemistry & Molecular Biology

Systematic discovery of in vivo phosphorylation networks

Rune Linding et al.

Article Chemistry, Multidisciplinary

Substrate profiling of protein tyrosine phosphatase PTP1B by screening a combinatorial peptide library

Mathieu Garaud et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2007)

Review Biochemistry & Molecular Biology

Protein tyrosine phosphatase function: the substrate perspective

Tony Tiganis et al.

BIOCHEMICAL JOURNAL (2007)

Article Chemistry, Multidisciplinary

A microarray strategy for mapping the substrate specificity of protein tyrosine phosphatase

Maja Koehn et al.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2007)

Article Biochemical Research Methods

Gene and protein nomenclature in public databases

Katrin Fundel et al.

BMC BIOINFORMATICS (2006)

Article Biochemical Research Methods

Two Sample Logo: a graphical representation of the differences between two sets of sequence alignments

Vladimir Vacic et al.

BIOINFORMATICS (2006)

Review Biochemistry & Molecular Biology

Redox redux: Revisiting PTPs and the control of cell signaling

NK Tonks

Article Biochemical Research Methods

Substrate-trapping techniques in the identification of cellular PTP targets

C Blanchetot et al.

METHODS (2005)

Article Biochemistry & Molecular Biology

Probing protein-tyrosine phosphatase substrate specificity using a phosphotyrosine-containing phage library

S Wälchli et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2004)

Article Biochemical Research Methods

Open source clustering software

MJL de Hoon et al.

BIOINFORMATICS (2004)

Review Biochemistry & Molecular Biology

Protein tyrosine phosphatases in the human genome

A Alonso et al.

Article Biochemistry & Molecular Biology

WebLogo: A sequence logo generator

GE Crooks et al.

GENOME RESEARCH (2004)

Article Biochemistry & Molecular Biology

The SPOT technique as a tool for studying protein tyrosine phosphatase substrate specificities

X Espanel et al.

PROTEIN SCIENCE (2002)

Review Cell Biology

Combinatorial control of the specificity of protein tyrosine phosphatases

NK Tonks et al.

CURRENT OPINION IN CELL BIOLOGY (2001)

Article Biochemistry & Molecular Biology

Protein Information Resource: a community resource for expert annotation of protein data

WC Barker et al.

NUCLEIC ACIDS RESEARCH (2001)

Article Biochemistry & Molecular Biology

Structural basis of plasticity in protein tyrosine phosphatase 1B substrate recognition

M Sarmiento et al.

BIOCHEMISTRY (2000)

Article Biochemistry & Molecular Biology

LMW-PTP exerts a differential regulation on PDGF- and insulin-mediated signaling

ML Taddei et al.

BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2000)

Article Biochemistry & Molecular Biology

Structural basis for substrate specificity of protein-tyrosine phosphatase SHP-1

J Yang et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2000)