Journal
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS
Volume 17, Issue 6, Pages 2107-2118Publisher
IEEE COMPUTER SOC
DOI: 10.1109/TCBB.2019.2917204
Keywords
Vegetation; Measurement; Phylogeny; Software; Topology; Computational modeling; Software algorithms; Phylogeny; genomics; evolution
Categories
Funding
- National Institutes of Health under the Joint DMS/NIGMS Initiative to Support Research at the Interface of the Biological and Mathematical Sciences [R01GM117590]
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Topological phylogenetic trees can be assigned edge weights in several natural ways, highlighting different aspects of the tree. Here, the rooted triple and quartet metrizations are introduced, and applied to formulate novel methods of inferring large trees from rooted triple and quartet data. These methods lead to new statistically consistent procedures for inference of a species tree from gene trees under the multispecies coalescent model.
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