4.5 Article

New Genes and Functional Innovation in Mammals

Related references

Note: Only part of the references are listed.
Article Biochemistry & Molecular Biology

2016 update of the PRIDE database and its related tools

Juan Antonio Vizcaino et al.

NUCLEIC ACIDS RESEARCH (2016)

Article Biochemistry & Molecular Biology

The life history of retrocopies illuminates the evolution of new mammalian genes

Francesco Nicola Carelli et al.

GENOME RESEARCH (2016)

Review Genetics & Heredity

Open questions in the study of de novo genes: what, how and why

Aoife McLysaght et al.

NATURE REVIEWS GENETICS (2016)

Article Multidisciplinary Sciences

Recent evolution of the salivary mucin MUC7

Duo Xu et al.

SCIENTIFIC REPORTS (2016)

Article Biotechnology & Applied Microbiology

Extreme genomic erosion after recurrent demographic bottlenecks in the highly endangered Iberian lynx

Federico Abascal et al.

GENOME BIOLOGY (2016)

Article Biochemistry & Molecular Biology

AP-57/C10orf99 is a new type of mutifunctional antimicrobial peptide

Meijia Yang et al.

BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2015)

Article Evolutionary Biology

The Recent De Novo Origin of Protein C-Termini

Matthew E. Andreatta et al.

GENOME BIOLOGY AND EVOLUTION (2015)

Article Multidisciplinary Sciences

The Genotype-Tissue Expression (GTEx) pilot analysis: Multitissue gene regulation in humans

Kristin G. Ardlie et al.

SCIENCE (2015)

Review Genetics & Heredity

Genes from scratch - the evolutionary fate of de novo genes

Christian Schloetterer

TRENDS IN GENETICS (2015)

Article Multidisciplinary Sciences

Enhanced transcriptome maps from multiple mouse tissues reveal evolutionary constraint in gene expression

Dmitri D. Pervouchine et al.

NATURE COMMUNICATIONS (2015)

Article Genetics & Heredity

Origins of De Novo Genes in Human and Chimpanzee

Jorge Ruiz-Orera et al.

PLOS GENETICS (2015)

Article Biochemistry & Molecular Biology

GenBank

Dennis A. Benson et al.

NUCLEIC ACIDS RESEARCH (2015)

Editorial Material Biochemistry & Molecular Biology

Evolution: Dynamics of De Novo Gene Emergence

Rafik Neme et al.

CURRENT BIOLOGY (2014)

Article Cell Biology

New genes contribute to genetic and phenotypic novelties in human evolution

Yong E. Zhang et al.

CURRENT OPINION IN GENETICS & DEVELOPMENT (2014)

Article Evolutionary Biology

Long-Term Asymmetrical Acceleration of Protein Evolution after Gene Duplication

Oriol Pich i Rosello et al.

GENOME BIOLOGY AND EVOLUTION (2014)

Article Biochemistry & Molecular Biology

Multiple evidence strands suggest that there may be as few as 19 000 human protein-coding genes

Iakes Ezkurdia et al.

HUMAN MOLECULAR GENETICS (2014)

Article Biochemistry & Molecular Biology

Evolutionary Origin and Diversification of Epidermal Barrier Proteins in Amniotes

Bettina Strasser et al.

MOLECULAR BIOLOGY AND EVOLUTION (2014)

Article Biochemistry & Molecular Biology

Ensembl 2014

Paul Flicek et al.

NUCLEIC ACIDS RESEARCH (2014)

Article Multidisciplinary Sciences

Origin and Spread of de Novo Genes in Drosophila melanogaster Populations

Li Zhao et al.

SCIENCE (2014)

Review Plant Sciences

Coming of age: orphan genes in plants

Zebulun W. Arendsee et al.

TRENDS IN PLANT SCIENCE (2014)

Article Evolutionary Biology

Emergence of novel domains in proteins

Macarena Toll-Riera et al.

BMC EVOLUTIONARY BIOLOGY (2013)

Article Biotechnology & Applied Microbiology

Phylogenetic patterns of emergence of new genes support a model of frequent de novo evolution

Rafik Neme et al.

BMC GENOMICS (2013)

Article Evolutionary Biology

Mechanisms and Dynamics of Orphan Gene Emergence in Insect Genomes

Lothar Wissler et al.

GENOME BIOLOGY AND EVOLUTION (2013)

Article Biochemistry & Molecular Biology

Accelerated Evolution after Gene Duplication: A Time-Dependent Process Affecting Just One Copy

Cinta Pegueroles et al.

MOLECULAR BIOLOGY AND EVOLUTION (2013)

Article Biochemistry & Molecular Biology

NCBI GEO: archive for functional genomics data sets-update

Tanya Barrett et al.

NUCLEIC ACIDS RESEARCH (2013)

Article Multidisciplinary Sciences

The Placental Mammal Ancestor and the Post-K-Pg Radiation of Placentals

Maureen A. O'Leary et al.

SCIENCE (2013)

Article Biotechnology & Applied Microbiology

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

Daehwan Kim et al.

GENOME BIOLOGY (2013)

Review Biochemistry & Molecular Biology

New genes expressed in human brains: Implications for annotating evolving genomes

Yong E. Zhang et al.

BIOESSAYS (2012)

Article Biochemical Research Methods

AMPA: an automated web server for prediction of protein antimicrobial regions

Marc Torrent et al.

BIOINFORMATICS (2012)

Article Biochemistry & Molecular Biology

Role of Low-Complexity Sequences in the Formation of Novel Protein Coding Sequences

Macarena Toll-Riera et al.

MOLECULAR BIOLOGY AND EVOLUTION (2012)

Article Multidisciplinary Sciences

Proto-genes and de novo gene birth

Anne-Ruxandra Carvunis et al.

NATURE (2012)

Article Multidisciplinary Sciences

De Novo Origin of Protein-Coding Genes in Murine Rodents

Daniel N. Murphy et al.

PLOS ONE (2012)

Article Biochemical Research Methods

Structure and Age Jointly Influence Rates of Protein Evolution

Macarena Toll-Riera et al.

PLOS COMPUTATIONAL BIOLOGY (2012)

Article Biotechnology & Applied Microbiology

An encyclopedia of mouse DNA elements (Mouse ENCODE)

John A. Stamatoyannopoulos et al.

GENOME BIOLOGY (2012)

Article Evolutionary Biology

Evolutionary origins of Brassicaceae specific genes in Arabidopsis thaliana

Mark T. A. Donoghue et al.

BMC EVOLUTIONARY BIOLOGY (2011)

Article Biotechnology & Applied Microbiology

Taxonomically restricted genes are associated with the evolution of sociality in the honey bee

Brian R. Johnson et al.

BMC GENOMICS (2011)

Article Biochemistry & Molecular Biology

Lineage-Specific Variation in Intensity of Natural Selection in Mammals

Macarena Toll-Riera et al.

MOLECULAR BIOLOGY AND EVOLUTION (2011)

Article Biochemistry & Molecular Biology

The Evolution of Milk Casein Genes from Tooth Genes before the Origin of Mammals

Kazuhiko Kawasaki et al.

MOLECULAR BIOLOGY AND EVOLUTION (2011)

Article Multidisciplinary Sciences

A high-resolution map of human evolutionary constraint using 29 mammals

Kerstin Lindblad-Toh et al.

NATURE (2011)

Review Genetics & Heredity

The evolutionary origin of orphan genes

Diethard Tautz et al.

NATURE REVIEWS GENETICS (2011)

Article Multidisciplinary Sciences

CONDETRI - A Content Dependent Read Trimmer for Illumina Data

Linnea Smeds et al.

PLOS ONE (2011)

Article Multidisciplinary Sciences

Impacts of the Cretaceous Terrestrial Revolution and KPg Extinction on Mammal Diversification

Robert W. Meredith et al.

SCIENCE (2011)

Article Genetics & Heredity

De Novo Origin of Human Protein-Coding Genes

Dong-Dong Wu et al.

PLOS GENETICS (2011)

Article Biochemical Research Methods

ETE: a python Environment for Tree Exploration

Jaime Huerta-Cepas et al.

BMC BIOINFORMATICS (2010)

Review Biochemistry & Molecular Biology

Origins, evolution, and phenotypic impact of new genes

Henrik Kaessmann

GENOME RESEARCH (2010)

Article Biotechnology & Applied Microbiology

Quantifying the mechanisms of domain gain in animal proteins

Marija Buljan et al.

GENOME BIOLOGY (2010)

Article Biochemistry & Molecular Biology

Emergence of a New Gene from an Intergenic Region

Tobias J. A. J. Heinen et al.

CURRENT BIOLOGY (2009)

Article Biochemistry & Molecular Biology

Recent de novo origin of human protein-coding genes

David G. Knowles et al.

GENOME RESEARCH (2009)

Article Evolutionary Biology

Genome 10K: A Proposal to Obtain Whole-Genome Sequence for 10 000 Vertebrate Species

David Haussler et al.

JOURNAL OF HEREDITY (2009)

Review Genetics & Heredity

More than just orphans: are taxonomically-restricted genes important in evolution?

Konstantin Khalturin et al.

TRENDS IN GENETICS (2009)

Article Biotechnology & Applied Microbiology

Characterization of taxonomically restricted genes in a phylum-restricted cell type

Sabine Milde et al.

GENOME BIOLOGY (2009)

Article Genetics & Heredity

A phylostratigraphy approach to uncover the genomic history of major adaptations in metazoan lineages

Tomislav Domazet-Loso et al.

TRENDS IN GENETICS (2007)

Article Evolutionary Biology

On homology searches by protein Blast and the characterization of the age of genes

M. Mar Alba et al.

BMC EVOLUTIONARY BIOLOGY (2007)

Review Microbiology

Unifying themes in host defence effector polypeptides

Michael R. Yeaman et al.

NATURE REVIEWS MICROBIOLOGY (2007)

Article Multidisciplinary Sciences

Novel genes derived from noncoding DNA in Drosophila melanogaster are frequently X-linked and exhibit testis-biased expression

Mia T. Levine et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)

Article Multidisciplinary Sciences

Evolutionary fate of retroposed gene copies in the human genome

N Vinckenbosch et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)

Article Biochemistry & Molecular Biology

Comparative phylogenetic analysis of Blcap/Nnat reveals eutherian-specific imprinted gene

HK Evans et al.

MOLECULAR BIOLOGY AND EVOLUTION (2005)

Article Biochemistry & Molecular Biology

Inverse relationship between evolutionary rate and age of mammalian genes

MM Albà et al.

MOLECULAR BIOLOGY AND EVOLUTION (2005)

Article Multidisciplinary Sciences

Evolving protein functional diversity in new genes of Drosophila

JM Zhang et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)

Article Biochemistry & Molecular Biology

An evolutionary analysis of orphan genes in Drosophila

T Domazet-Loso et al.

GENOME RESEARCH (2003)

Article Biochemistry & Molecular Biology

Asthenozoospermia in mice with targeted deletion of the sperm mitochondrion-associated cysteine-rich protein (Smcp) gene

K Nayernia et al.

MOLECULAR AND CELLULAR BIOLOGY (2002)

Article Multidisciplinary Sciences

The genome sequence of Schizosaccharomyces pombe

V Wood et al.

NATURE (2002)

Article Immunology

Dermcidin: a novel human antibiotic peptide secreted by sweat glands

B Schittek et al.

NATURE IMMUNOLOGY (2001)