Related references
Note: Only part of the references are listed.Evidence-based green algal genomics reveals marine diversity and ancestral characteristics of land plants
Marijke J. van Baren et al.
BMC GENOMICS (2016)
Mechanism for DNA transposons to generate introns on genomic scales
Jason T. Huff et al.
NATURE (2016)
Utilizing Gene Tree Variation to Identify Candidate Effector Genes in Zymoseptoria tritici
Megan C. McDonald et al.
G3-GENES GENOMES GENETICS (2016)
The Impact of Recombination Hotspots on Genome Evolution of a Fungal Plant Pathogen
Daniel Croll et al.
GENETICS (2015)
Extensive Horizontal Transfer and Homologous Recombination Generate Highly Chimeric Mitochondrial Genomes in Yeast
Baojun Wu et al.
MOLECULAR BIOLOGY AND EVOLUTION (2015)
Intron Invasions Trace Algal Speciation and Reveal Nearly Identical Arctic and Antarctic Micromonas Populations
Melinda P. Simmons et al.
MOLECULAR BIOLOGY AND EVOLUTION (2015)
Transcriptome and Metabolite Profiling of the Infection Cycle of Zymoseptoria tritici on Wheat Reveals a Biphasic Interaction with Plant Immunity Involving Differential Pathogen Chromosomal Contributions and a Variation on the Hemibiotrophic Lifestyle Definition
Jason J. Rudd et al.
PLANT PHYSIOLOGY (2015)
Introns and gene expression: Cellular constraints, transcriptional regulation, and evolutionary consequences
Patricia Heyn et al.
BIOESSAYS (2015)
Intron evolution in Neurospora: the role of mutational bias and selection
Yu Sun et al.
GENOME RESEARCH (2015)
DiscML: an R package for estimating evolutionary rates of discrete characters using maximum likelihood
Tane Kim et al.
BMC BIOINFORMATICS (2014)
Characterization of Newly Gained Introns in Daphnia Populations
Wenli Li et al.
GENOME BIOLOGY AND EVOLUTION (2014)
Hitchhiking Selection Is Driving Intron Gain in a Pathogenic Fungus
Patrick C. Brunner et al.
MOLECULAR BIOLOGY AND EVOLUTION (2014)
The trouble with (group II) introns
W. Ford Doolittle
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
RNA-RNA interactions and pre-mRNA mislocalization as drivers of group II intron loss from nuclear genomes
Guosheng Qu et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Horizontal Transfer and Gene Conversion as an Important Driving Force in Shaping the Landscape of Mitochondrial Introns
Baojun Wu et al.
G3-GENES GENOMES GENETICS (2014)
The Complex Intron Landscape and Massive Intron Invasion in a Picoeukaryote Provides Insights into Intron Evolution
Bram Verhelst et al.
GENOME BIOLOGY AND EVOLUTION (2013)
Breakage-fusion-bridge Cycles and Large Insertions Contribute to the Rapid Evolution of Accessory Chromosomes in a Fungal Pathogen
Daniel Croll et al.
PLOS GENETICS (2013)
TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
Daehwan Kim et al.
GENOME BIOLOGY (2013)
Identifying the mechanisms of intron gain: progress and trends
Paul Yenerall et al.
BIOLOGY DIRECT (2012)
Birth of New Spliceosomal Introns in Fungi by Multiplication of Introner-like Elements
Ate van der Burgt et al.
CURRENT BIOLOGY (2012)
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
Anton Bankevich et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2012)
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
Cole Trapnell et al.
NATURE PROTOCOLS (2012)
Evidence for Extensive Recent Intron Transposition in Closely Related Fungi
Stefano F. F. Torriani et al.
CURRENT BIOLOGY (2011)
The making of a new pathogen: Insights from comparative population genomics of the domesticated wheat pathogen Mycosphaerella graminicola and its wild sister species
Eva H. Stukenbrock et al.
GENOME RESEARCH (2011)
DNA double-strand break repair and the evolution of intron density
Ashley Farlow et al.
TRENDS IN GENETICS (2011)
A Detailed History of Intron-rich Eukaryotic Ancestors Inferred from a Global Survey of 100 Complete Genomes
Miklos Csuros et al.
PLOS COMPUTATIONAL BIOLOGY (2011)
Finished Genome of the Fungal Wheat Pathogen Mycosphaerella graminicola Reveals Dispensome Structure, Chromosome Plasticity, and Stealth Pathogenesis
Stephen B. Goodwin et al.
PLOS GENETICS (2011)
Inferring Bacterial Genome Flux While Considering Truncated Genes
Weilong Hao et al.
GENETICS (2010)
Plasticity of Animal Genome Architecture Unmasked by Rapid Evolution of a Pelagic Tunicate
France Denoeud et al.
SCIENCE (2010)
Promiscuous DNA: horizontal transfer of transposable elements and why it matters for eukaryotic evolution
Sarah Schaack et al.
TRENDS IN ECOLOGY & EVOLUTION (2010)
DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
P. Librado et al.
BIOINFORMATICS (2009)
Extensive, Recent Intron Gains in Daphnia Populations
Wenli Li et al.
SCIENCE (2009)
Green Evolution and Dynamic Adaptations Revealed by Genomes of the Marine Picoeukaryotes Micromonas
Alexandra Z. Worden et al.
SCIENCE (2009)
Frequent, phylogenetically local horizontal transfer of the cox1 group I intron in flowering plant mitochondria
M. Virginia Sanchez-Puerta et al.
MOLECULAR BIOLOGY AND EVOLUTION (2008)
Genomic minimalism in the early diverging intestinal parasite Giardia lamblia
Hilary G. Morrison et al.
SCIENCE (2007)
RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
Alexandros Stamatakis
BIOINFORMATICS (2006)
The origin of introns and their role in eukaryogenesis: a compromise solution to the introns-early versus introns-late debate?
Eugene V. Koonin
BIOLOGY DIRECT (2006)
The fate of laterally transferred genes: Life in the fast lane to adaptation or death
WL Hao et al.
GENOME RESEARCH (2006)
Rates of intron loss and gain: Implications for early eukaryotic evolution
SW Roy et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
Divergent histories of rDNA group I introns in the lichen family Physciaceae
D Simon et al.
JOURNAL OF MOLECULAR EVOLUTION (2005)
MUSCLE: multiple sequence alignment with high accuracy and high throughput
RC Edgar
NUCLEIC ACIDS RESEARCH (2004)
Phylogenetic analysis of globally distributed Mycosphaerella graminicola populations based on three DNA sequence loci
S Banke et al.
FUNGAL GENETICS AND BIOLOGY (2004)
Reconstruction of ancestral protosplice sites
AV Sverdlov et al.
CURRENT BIOLOGY (2004)
Mobile group II introns
AM Lambowitz et al.
ANNUAL REVIEW OF GENETICS (2004)
The origin of recent introns: transposons?
SW Roy
GENOME BIOLOGY (2004)
The dispersal of five group II introns among natural populations of Escherichia coli
LX Dai et al.
RNA (2002)
Nuclear small subunit rRNA group I intron variation among Beauveria spp provide tools for strain identification and evidence of horizontal transfer
BS Coates et al.
CURRENT GENETICS (2002)
Evolutionary dynamics of multiple group I introns in nuclear ribosomal RNA genes of endoparasitic fungi of the genus Cordyceps
N Nikoh et al.
MOLECULAR BIOLOGY AND EVOLUTION (2001)