4.6 Article

Clinical utility of next-generation sequencing for inherited bone marrow failure syndromes

Journal

GENETICS IN MEDICINE
Volume 19, Issue 7, Pages 796-802

Publisher

ELSEVIER SCIENCE INC
DOI: 10.1038/gim.2016.197

Keywords

Fanconi anemia; inherited bone marrow failure; next-generation sequencing; target sequencing; whole-exome sequencing

Funding

  1. Research on Measures for Intractable Diseases Project from Ministry of Health, Labor, and Welfare
  2. Ministry of Health, Labor, and Welfare of Japan [H23-TA012]
  3. Grants-in-Aid for Scientific Research [16K10041, 15K09647, 16K09832, 15H04874] Funding Source: KAKEN

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Purpose: Precise genetic diagnosis of inherited bone marrow failure syndromes (IBMFS), a heterogeneous group of genetic disorders, is challenging but essential for precise clinical decision making. Methods: We analyzed 121 IBMFS patients using a targeted sequencing covering 184 associated genes and 250 IBMFS patients using whole-exome sequencing (WES). Results: We achieved successful genetic diagnoses for 53 of 121 patients (44%) using targeted sequencing and for 68 of 250 patients (27%) using WES. In the majority of cases (targeted sequencing: 45/53, 85%; WES: 63/68, 93%), the detected variants were concordant with, and therefore supported, the clinical diagnoses. However, in the remaining 13 cases (8 patients by target sequencing and 5 patients by WES), the clinical diagnoses were incompatible with the detected variants. Conclusion: Our approach utilizing targeted sequencing and WES achieved satisfactory diagnostic rates and supported the efficacy of massive parallel sequencing as a diagnostic tool for IBMFS.

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