A survey of biodiversity informatics: Concepts, practices, and challenges

The unprecedented size of the human population, along with its associated economic activities, has an ever-increasing impact on global environments. Across the world, countries are concerned about the growing resource consumption and the capacity of ecosystems to provide resources. To effectively conserve biodiversity, it is essential to make indicators and knowledge openly available to decision-makers in ways that they can effectively use them. The development and deployment of tools and techniques to generate these indicators require having access to trustworthy data from biological collections, field surveys and automated sensors, molecular data, and historic academic literature. The transformation of these raw data into synthesized information that is fit for use requires going through many refinement steps. The methodologies and techniques applied to manage and analyze these data constitute an area usually called biodiversity informatics. Biodiversity data follow a life cycle consisting of planning, collection, certification, description, preservation, discovery, integration, and analysis. Researchers, whether producers or consumers of biodiversity data, will likely perform activities related to at least one of these steps. This article explores each stage of the life cycle of biodiversity data, discussing its methodologies, tools, and challenges. This article is categorized under: Algorithmic Development > Biological Data Mining

Automated summary

The unprecedented size of the human population and its economic activities have an increasing impact on global environments, raising concerns about resource consumption and ecosystem capacity. To effectively conserve biodiversity, indicators and knowledge must be openly available to decision-makers in usable ways, requiring tools and techniques to generate trustworthy data from various sources.