Related references
Note: Only part of the references are listed.SignalP 5.0 improves signal peptide predictions using deep neural networks
Jose Juan Almagro Armenteros et al.
NATURE BIOTECHNOLOGY (2019)
Understanding and engineering alcohol-tolerant bacteria using OMICS technology
Takaaki Horinouchi et al.
WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY (2018)
Integrated multi-omics analyses reveal the biochemical mechanisms and phylogenetic relevance of anaerobic androgen biodegradation in the environment
Fu-Chun Yang et al.
ISME JOURNAL (2016)
Proteogenomic Characterization of Monocyclic Aromatic Hydrocarbon Degradation Pathways in the Aniline-Degrading Bacterium Burkholderia sp K24
Sang-Yeop Lee et al.
PLOS ONE (2016)
Microbial biotransformation as a tool for drug development based on natural products from mevalonic acid pathway: A review
Mohamed-Elamir F. Hegazy et al.
JOURNAL OF ADVANCED RESEARCH (2015)
HTSeq-a Python framework to work with high-throughput sequencing data
Simon Anders et al.
BIOINFORMATICS (2015)
Prokka: rapid prokaryotic genome annotation
Torsten Seemann
BIOINFORMATICS (2014)
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony M. Bolger et al.
BIOINFORMATICS (2014)
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
Michael I. Love et al.
GENOME BIOLOGY (2014)
STAR: ultrafast universal RNA-seq aligner
Alexander Dobin et al.
BIOINFORMATICS (2013)
Mechanism of anchoring of OmpA protein to the cell wall peptidoglycan of the gram-negative bacterial outer membrane
Jeong Soon Park et al.
FASEB JOURNAL (2012)
Quality control and preprocessing of metagenomic datasets
Robert Schmieder et al.
BIOINFORMATICS (2011)
Quantitative Proteomic Analysis of Cell Wall and Plasma Membrane Fractions from Multidrug-Resistant Acinetobacter baumannii
Sung-Ho Yun et al.
JOURNAL OF PROTEOME RESEARCH (2011)
Proteomic characterization of the Pseudomonas putida KT2440 global response to a monocyclic aromatic compound by iTRAQ analysis and 1DE-MudPIT
Sung-Ho Yun et al.
JOURNAL OF PROTEOMICS (2011)
Microbial degradation of aromatic compounds - from one strategy to four
Georg Fuchs et al.
NATURE REVIEWS MICROBIOLOGY (2011)
PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes
Nancy Y. Yu et al.
BIOINFORMATICS (2010)
The RAST server: Rapid annotations using subsystems technology
Ramy K. Aziz et al.
BMC GENOMICS (2008)
The CGView Server: a comparative genomics tool for circular genomes
Jason R. Grant et al.
NUCLEIC ACIDS RESEARCH (2008)
CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats
Ibtissem Grissa et al.
NUCLEIC ACIDS RESEARCH (2007)
RNAmmer:: consistent and rapid annotation of ribosomal RNA genes
Karin Lagesen et al.
NUCLEIC ACIDS RESEARCH (2007)
Exponentially modified protein abundance index (emPAI) for estimation of absolute protein amount in proteomics by the number of sequenced peptides per protein
Y Ishihama et al.
MOLECULAR & CELLULAR PROTEOMICS (2005)
Secreted protein prediction system combining CJ-SPHMM, TMHMM, and PSORT
YJ Chen et al.
MAMMALIAN GENOME (2003)
Degradation of aniline by newly isolated, extremely aniline-tolerant Delftia sp AN3
Z Liu et al.
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2002)