Related references
Note: Only part of the references are listed.Host genetic effects upon the early gut microbiota in a bovine model with graduated spectrum of genetic variation
Peixin Fan et al.
ISME JOURNAL (2020)
Ecological and evolutionary mechanisms underlying patterns of phylosymbiosis in host-associated microbial communities
Kevin D. Kohl
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2020)
Contamination in Low Microbial Biomass Microbiome Studies: Issues and Recommendations
Raphael Eisenhofer et al.
TRENDS IN MICROBIOLOGY (2019)
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
Evan Bolyen et al.
NATURE BIOTECHNOLOGY (2019)
Controlling for Contaminants in Low-Biomass 16S rRNA Gene Sequencing Experiments
Lisa Karstens et al.
MSYSTEMS (2019)
Dysbiosis of the gut microbiome is associated with thyroid cancer and thyroid nodules and correlated with clinical index of thyroid function
Jiaming Zhang et al.
ENDOCRINE (2019)
Role of priority effects in the early-life assembly of the gut microbiota
Daniel Sprockett et al.
NATURE REVIEWS GASTROENTEROLOGY & HEPATOLOGY (2018)
Glycan Utilization and Cross-Feeding Activities by Bifidobacteria
Francesca Turroni et al.
TRENDS IN MICROBIOLOGY (2018)
Environment dominates over host genetics in shaping human gut microbiota
Daphna Rothschild et al.
NATURE (2018)
Experimental evaluation of the importance of colonization history in early-life gut microbiota assembly
Ines Martinez et al.
ELIFE (2018)
Bacterial Abundance and Community Composition in Pond Water From Shrimp Aquaculture Systems With Different Stocking Densities
Yustian Rovi Alfiansah et al.
FRONTIERS IN MICROBIOLOGY (2018)
Gut microbial ecology of lizards: insights into diversity in the wild, effects of captivity, variation across gut regions and transmission
Kevin D. Kohl et al.
MOLECULAR ECOLOGY (2017)
Dispersal limitation promotes the diversification of the mammalian gut microbiota
Andrew H. Moeller et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)
Inferring Microbial Interactions in the Gut of the Hong Kong Whipping Frog (Polypedates megacephalus) and a Validation Using Probiotics
Francis Cheng-Hsuan Weng et al.
FRONTIERS IN MICROBIOLOGY (2017)
The microbiome beyond the horizon of ecological and evolutionary theory
Britt Koskella et al.
NATURE ECOLOGY & EVOLUTION (2017)
Forgotten fungi-the gut mycobiome in human health and disease
Chloe E. Huseyin et al.
FEMS MICROBIOLOGY REVIEWS (2017)
The composition of the zebrafish intestinal microbial community varies across development
W. Zac Stephens et al.
ISME JOURNAL (2016)
Contribution of neutral processes to the assembly of gut microbial communities in the zebrafish over host development
Adam R. Burns et al.
ISME JOURNAL (2016)
Environmental filtering decreases with fish development for the assembly of gut microbiota
Qingyun Yan et al.
ENVIRONMENTAL MICROBIOLOGY (2016)
Characterization of the gut microbiota of migratory passerines during stopover along the northern coast of the Gulf of Mexico
William B. Lewis et al.
JOURNAL OF AVIAN BIOLOGY (2016)
A place for host-microbe symbiosis in the comparative physiologist's toolbox
Kevin D. Kohl et al.
JOURNAL OF EXPERIMENTAL BIOLOGY (2016)
Genome-wide association analysis identifies variation in vitamin D receptor and other host factors influencing the gut microbiota
Jun Wang et al.
NATURE GENETICS (2016)
DADA2: High-resolution sample inference from Illumina amplicon data
Benjamin J. Callahan et al.
NATURE METHODS (2016)
Gut bacterial communities across tadpole ecomorphs in two diverse tropical anuran faunas
Miguel Vences et al.
SCIENCE OF NATURE (2016)
Inherent bacterial DNA contamination of extraction and sequencing reagents may affect interpretation of microbiota in low bacterial biomass samples
Angela Glassing et al.
GUT PATHOGENS (2016)
Gut bacterial communities across tadpole ecomorphs in two diverse tropical anuran faunas
Miguel Vences et al.
SCIENCE OF NATURE (2016)
Life history linked to immune investment in developing amphibians
Douglas C. Woodhams et al.
CONSERVATION PHYSIOLOGY (2016)
Evolution of the immune system in humans from infancy to old age
A. Katharina Simon et al.
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2015)
Inference of Network Dynamics and Metabolic Interactions in the Gut Microbiome
Steven N. Steinway et al.
PLOS COMPUTATIONAL BIOLOGY (2015)
Reagent and laboratory contamination can critically impact sequence-based microbiome analyses
Susannah J. Salter et al.
BMC BIOLOGY (2014)
Human Genetics Shape the Gut Microbiome
Julia K. Goodrich et al.
CELL (2014)
Amphibian skin may select for rare environmental microbes
Jenifer B. Walke et al.
ISME JOURNAL (2014)
Complex Interactions Among Diet, Gastrointestinal Transit, and Gut Microbiota in Humanized Mice
Purna C. Kashyap et al.
GASTROENTEROLOGY (2013)
Habitat degradation impacts black howler monkey (Alouatta pigra) gastrointestinal microbiomes
Katherine R. Amato et al.
ISME JOURNAL (2013)
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
Christian Quast et al.
NUCLEIC ACIDS RESEARCH (2013)
Metabolic modeling of species interaction in the human microbiome elucidates community-level assembly rules
Roie Levy et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Animals in a bacterial world, a new imperative for the life sciences
Margaret McFall-Ngai et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Restructuring of the amphibian gut microbiota through metamorphosis
Kevin D. Kohl et al.
ENVIRONMENTAL MICROBIOLOGY REPORTS (2013)
Mom Knows Best: The Universality of Maternal Microbial Transmission
Lisa J. Funkhouser et al.
PLOS BIOLOGY (2013)
Beyond the Venn diagram: the hunt for a core microbiome
Ashley Shade et al.
ENVIRONMENTAL MICROBIOLOGY (2012)
Behavioral and physiological female responses to male sex ratio bias in a pond-breeding amphibian
Kristine L. Grayson et al.
FRONTIERS IN ZOOLOGY (2012)
Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms
J. Gregory Caporaso et al.
ISME JOURNAL (2012)
Quantification of the relative roles of niche and neutral processes in structuring gastrointestinal microbiomes
Patricio Jeraldo et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
Interactions Between the Microbiota and the Immune System
Lora V. Hooper et al.
SCIENCE (2012)
Unravelling the effects of the environment and host genotype on the gut microbiome
Ayme Spor et al.
NATURE REVIEWS MICROBIOLOGY (2011)
Succession of microbial consortia in the developing infant gut microbiome
Jeremy E. Koenig et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
Diet Drives Convergence in Gut Microbiome Functions Across Mammalian Phylogeny and Within Humans
Brian D. Muegge et al.
SCIENCE (2011)
Bacterial biogeography of the human digestive tract
Jennifer C. Stearns et al.
SCIENTIFIC REPORTS (2011)
Convergent temporal dynamics of the human infant gut microbiota
Pal Trosvik et al.
ISME JOURNAL (2010)
Subgingival Microbial Profiles of Smokers with Periodontitis
A. Y. Shchipkova et al.
JOURNAL OF DENTAL RESEARCH (2010)
A human gut microbial gene catalogue established by metagenomic sequencing
Junjie Qin et al.
NATURE (2010)
FastTree 2-Approximately Maximum-Likelihood Trees for Large Alignments
Morgan N. Price et al.
PLOS ONE (2010)
Individuality in gut microbiota composition is a complex polygenic trait shaped by multiple environmental and host genetic factors
Andrew K. Benson et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
Terrestrial movements and habitat use of juvenile and emigrating adult Eastern Red-Spotted Newts, Notophthalmus viridescens
Andrew W. Roe et al.
JOURNAL OF HERPETOLOGY (2008)
Ontogenetic changes in diet and habitat use in green sea turtle (Chelonia mydas) life history
Karen E. Arthur et al.
MARINE ECOLOGY PROGRESS SERIES (2008)
Evolution of mammals and their gut microbes
Ruth E. Ley et al.
SCIENCE (2008)
Development of the human infant intestinal microbiota
Chana Palmer et al.
PLOS BIOLOGY (2007)
Amphibian metamorphosis
Donald D. Brown et al.
DEVELOPMENTAL BIOLOGY (2007)
Reciprocal gut microbiota transplants from zebrafish and mice to germ-free recipients reveal host habitat selection
John F. Rawls et al.
CELL (2006)
Quantifying the roles of immigration and chance in shaping prokaryote community structure
WT Sloan et al.
ENVIRONMENTAL MICROBIOLOGY (2006)
Ontogeny of the immune system of fish
A Zapata et al.
FISH & SHELLFISH IMMUNOLOGY (2006)
UniFrac: a new phylogenetic method for comparing microbial communities
C Lozupone et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2005)
Comparative metagenomics of microbial communities
SG Tringe et al.
SCIENCE (2005)