Related references
Note: Only part of the references are listed.Simulation of FUS Protein Condensates with an Adapted Coarse-Grained Model
Zakarya Benayad et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2021)
Fundamental Challenges and Outlook in Simulating Liquid-Liquid Phase Separation of Intrinsically Disordered Proteins
Khandekar Jishan Bari et al.
JOURNAL OF PHYSICAL CHEMISTRY LETTERS (2021)
Martini 3: a general purpose force field for coarse-grained molecular dynamics
Paulo C. T. Souza et al.
NATURE METHODS (2021)
Driving Force for the Complexation of Charged Polypeptides
Aditya N. Singh et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2020)
Biomolecular Phase Separation: From Molecular Driving Forces to Macroscopic Properties
Gregory L. Dignon et al.
Annual Review of Physical Chemistry (2020)
Membrane mediated toppling mechanism of the folate energy coupling factor transporter
Ignacio Faustino et al.
NATURE COMMUNICATIONS (2020)
Combining molecular dynamics simulations with small-angle X-ray and neutron scattering data to study multi-domain proteins in solution
Andreas Haahr Larsen et al.
PLoS Computational Biology (2020)
Composition-dependent thermodynamics of intracellular phase separation
Joshua A. Riback et al.
NATURE (2020)
Phase Separation of Toxic Dipeptide Repeat Proteins Related to C9orf72 ALS/FTD
Hamidreza Jafarinia et al.
BIOPHYSICAL JOURNAL (2020)
Visualizing Molecular Architectures of Cellular Condensates: Hints of Complex Coacervation Scenarios
Sara Kathrin Goetz et al.
DEVELOPMENTAL CELL (2020)
Protein-ligand binding with the coarse-grained Martini model
Paulo C. T. Souza et al.
NATURE COMMUNICATIONS (2020)
Phase Boundary and Salt Partitioning in Coacervate Complexes Formed between Poly(acrylic acid) and Poly(N,N-dimethylaminoethyl methacrylate) from Detailed Atomistic Simulations Combined with Free Energy Perturbation and Thermodynamic Integration Calculations
Dimitris G. Mintis et al.
MACROMOLECULES (2020)
Molecular Details of Protein Condensates Probed by Microsecond Long Atomistic Simulations
Wenwei Zheng et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2020)
Martini coarse-grained models of imidazolium-based ionic liquids: from nanostructural organization to liquid-liquid extraction
Luis Itza Vazquez-Salazar et al.
GREEN CHEMISTRY (2020)
Self-diffusion coefficient of bulk and confined water: a critical review of classical molecular simulation studies
Ioannis N. Tsimpanogiannis et al.
MOLECULAR SIMULATION (2019)
Temperature-Controlled Liquid-Liquid Phase Separation of Disordered Proteins
Gregory L. Dignon et al.
ACS CENTRAL SCIENCE (2019)
An Allosteric Pathway in Copper, Zinc Superoxide Dismutase Unravels the Molecular Mechanism of the G93A Amyotrophic Lateral Sclerosis-Linked Mutation
Paulo C. T. Souza et al.
JOURNAL OF PHYSICAL CHEMISTRY LETTERS (2019)
Interfacial properties of polymeric complex coacervates from simulation and theory
Tyler K. Lytle et al.
JOURNAL OF CHEMICAL PHYSICS (2018)
Transferable MARTINI Model of Poly(ethylene Oxide)
Fabian Grunewald et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2018)
Phase Behavior and Salt Partitioning in Polyelectrolyte Complex Coacervates
Lu Li et al.
MACROMOLECULES (2018)
Relation between single-molecule properties and phase behavior of intrinsically disordered proteins
Gregory L. Dignon et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)
Hydration and Temperature Response of Water Mobility in Poly(diallyldimethylammonium)-Poly(sodium 4-styrenesulfonate) Complexes
Piotr Batys et al.
MACROMOLECULES (2018)
Tuning chain interaction entropy in complex coacervation using polymer stiffness, architecture, and salt valency
Tyler K. Lytle et al.
MOLECULAR SYSTEMS DESIGN & ENGINEERING (2018)
Growth and division of active droplets provides a model for protocells
David Zwicker et al.
NATURE PHYSICS (2017)
Molecular Connectivity and Correlation Effects on Polymer Coacervation
Mithun Radhakrishna et al.
MACROMOLECULES (2017)
Phase separation drives heterochromatin domain formation
Amy R. Strom et al.
NATURE (2017)
Biomolecular condensates: organizers of cellular biochemistry
Salman F. Banani et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2017)
Dissipative particle dynamics simulations of polyelectrolyte self-assemblies. Methods with explicit electrostatics
Martin Lisal et al.
POLYMER SCIENCE SERIES C (2017)
Transfer matrix theory of polymer complex coacervation
Tyler K. Lytle et al.
SOFT MATTER (2017)
Sequence and entropy-based control of complex coacervates
Li-Wei Chang et al.
NATURE COMMUNICATIONS (2017)
Development of the modern theory of polymeric complex coacervation
Charles E. Sing
ADVANCES IN COLLOID AND INTERFACE SCIENCE (2017)
Martini Coarse-Grained Force Field: Extension to RNA
Jaakko J. Uusitalo et al.
BIOPHYSICAL JOURNAL (2017)
Martini straight: Boosting performance using a shorter cutoff and GPUs
Djurre H. de Jong et al.
COMPUTER PHYSICS COMMUNICATIONS (2016)
A Molecular Thermodynamic Model of Complexation in Mixtures of Oppositely Charged Polyelectrolytes with Explicit Account of Charge Association/Dissociation
Ali Salehi et al.
MACROMOLECULES (2016)
Membraneless organelles can melt nucleic acid duplexes and act as biomolecular filters
Timothy J. Nott et al.
NATURE CHEMISTRY (2016)
Coarse-grained simulations of polyelectrolyte complexes: MARTINI models for poly(styrene sulfonate) and poly(diallyldimethylammonium)
Martin Voegele et al.
JOURNAL OF CHEMICAL PHYSICS (2015)
Polymer physics of intracellular phase transitions
Clifford P. Brangwynne et al.
NATURE PHYSICS (2015)
Theory and recent applications of coacervate-based extraction techniques
A. Melnyk et al.
TRAC-TRENDS IN ANALYTICAL CHEMISTRY (2015)
Chirality-selected phase behaviour in ionic polypeptide complexes
Sarah L. Perry et al.
NATURE COMMUNICATIONS (2015)
Rapid RNA Exchange in Aqueous Two-Phase System and Coacervate Droplets
Tony Z. Jia et al.
ORIGINS OF LIFE AND EVOLUTION OF BIOSPHERES (2014)
The Strong RNA World Hypothesis: Fifty Years Old
Marc Neveu et al.
ASTROBIOLOGY (2013)
Asymmetric Collapse in Biomimetic Complex Coacervates Revealed by Local Polymer and Water Dynamics
Julia H. Ortony et al.
BIOMACROMOLECULES (2013)
Perspective on the Martini model
Siewert J. Marrink et al.
CHEMICAL SOCIETY REVIEWS (2013)
Improved Parameters for the Martini Coarse-Grained Protein Force Field
Djurre H. de Jong et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2013)
The RNA world hypothesis: the worst theory of the early evolution of life (except for all the others)
Harold S. Bernhardt
BIOLOGY DIRECT (2012)
Interfacial Energy of Polypeptide Complex Coacervates Measured via Capillary Adhesion
Dimitrios Priftis et al.
LANGMUIR (2012)
Phase behaviour and complex coacervation of aqueous polypeptide solutions
Dimitrios Priftis et al.
SOFT MATTER (2012)
Active liquid-like behavior of nucleoli determines their size and shape in Xenopus laevis oocytes
Clifford P. Brangwynne et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
Local Water Dynamics in Coacervated Polyelectrolytes Monitored through Dynamic Nuclear Polarization-Enhanced 1H NMR (vol 42, pg 7404, 2009)
Ravinath Kausik et al.
MACROMOLECULES (2010)
Molecular Dynamics Simulations of DNA-Polycation Complex Formation
Jesse Ziebarth et al.
BIOPHYSICAL JOURNAL (2009)
Martini Coarse-Grained Force Field: Extension to Carbohydrates
Cesar A. Lopez et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2009)
Germline P Granules Are Liquid Droplets That Localize by Controlled Dissolution/Condensation
Clifford P. Brangwynne et al.
SCIENCE (2009)
Understanding polyelectrolyte multilayers: an open challenge for simulations
Juan J. Cerda et al.
SOFT MATTER (2009)
Heterogeneity of polyelectrolyte diffusion in polyelectrolyte-protein coacervates:: A 1H pulsed field gradient NMR study
Amrish R. Menjoge et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2008)
The MARTINI force field: Coarse grained model for biomolecular simulations
Siewert J. Marrink et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2007)
Canonical sampling through velocity rescaling
Giovanni Bussi et al.
JOURNAL OF CHEMICAL PHYSICS (2007)
Length scale for the onset of Fickian diffusion in supercooled liquids
L Berthier et al.
EUROPHYSICS LETTERS (2005)
Prebiotic chemistry and the origin of the RNA world
LE Orgel
CRITICAL REVIEWS IN BIOCHEMISTRY AND MOLECULAR BIOLOGY (2004)
Glassy dynamics of kinetically constrained models
F Ritort et al.
ADVANCES IN PHYSICS (2003)
Share Paper
