Related references
Note: Only part of the references are listed.The Importance of Computational Modeling in Stem Cell Research
Antonio del Sol et al.
TRENDS IN BIOTECHNOLOGY (2021)
A rationally engineered decoder of transient intracellular signals
Claude Lormeau et al.
NATURE COMMUNICATIONS (2021)
Single-cell and spatial transcriptomics reveal somitogenesis in gastruloids
Susanne C. van den Brink et al.
NATURE (2020)
Benchmarking algorithms for gene regulatory network inference from single-cell transcriptomic data
Aditya Pratapa et al.
NATURE METHODS (2020)
A Dynamical Paradigm for Molecular Cell Biology
John J. Tyson et al.
TRENDS IN CELL BIOLOGY (2020)
Multistable and dynamic CRISPRi-based synthetic circuits
Javier Santos-Moreno et al.
NATURE COMMUNICATIONS (2020)
Growth-factor-mediated coupling between lineage size and cell fate choice underlies robustness of mammalian development
Nestor Saiz et al.
ELIFE (2020)
Eleven grand challenges in single-cell data science
David Laehnemann et al.
GENOME BIOLOGY (2020)
Transcriptome-scale super-resolved imaging in tissues by RNA seqFISH
Chee-Huat Linus Eng et al.
NATURE (2019)
Slide-seq: A scalable technology for measuring genome-wide expression at high spatial resolution
Samuel G. Rodriques et al.
SCIENCE (2019)
The emergent landscape of the mouse gut endoderm at single-cell resolution
Sonja Nowotschin et al.
NATURE (2019)
Self-Organization in Pattern Formation
Francois Schweisguth et al.
DEVELOPMENTAL CELL (2019)
High-definition spatial transcriptomics for in situ tissue profiling
Sanja Vickovic et al.
NATURE METHODS (2019)
Drugs modulating stochastic gene expression affect the erythroid differentiation process
Anissa Guillemin et al.
PLOS ONE (2019)
Massive computational acceleration by using neural networks to emulate mechanism-based biological models
Shangying Wang et al.
NATURE COMMUNICATIONS (2019)
Guiding self-organized pattern formation in cell polarity establishment
Peter Gross et al.
NATURE PHYSICS (2019)
Machine Learning of Stem Cell Identities From Single-Cell Expression Data via Regulatory Network Archetypes
Patrick S. Stumpf et al.
FRONTIERS IN GENETICS (2019)
Mechanistic models versus machine learning, a fight worth fighting for the biological community?
Ruth E. Baker et al.
BIOLOGY LETTERS (2018)
Maximizing the information learned from finite data selects a simple model
Henry H. Mattingly et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)
The dynamics of gene expression in vertebrate embryogenesis at single-cell resolution
James A. Briggs et al.
SCIENCE (2018)
Multi-axial self-organization properties of mouse embryonic stem cells into gastruloids
Leonardo Beccari et al.
NATURE (2018)
THE TENSION BETWEEN BIG DATA AND THEORY IN THE OMICS ERA OF BIOMEDICAL RESEARCH
Sui Huang
PERSPECTIVES IN BIOLOGY AND MEDICINE (2018)
A living mesoscopic cellular automaton made of skin scales
Liana Manukyan et al.
NATURE (2017)
Self-organized Notch dynamics generate stereotyped sensory organ patterns in Drosophila
Francis Corson et al.
SCIENCE (2017)
Gene-free methodology for cell fate dynamics during development
Francis Corson et al.
ELIFE (2017)
What Is Your Conceptual Definition of “Cell Type” in the Context of a Mature Organism?
Cell Systems (2017)
Stem Cell Differentiation as a Non-Markov Stochastic Process
Patrick S. Stumpf et al.
CELL SYSTEMS (2017)
Untangling the Hairball: Fitness-Based Asymptotic Reduction of Biological Networks
Felix Proulx-Giraldeau et al.
BIOPHYSICAL JOURNAL (2017)
Transition states and cell fate decisions in epigenetic landscapes
Naomi Moris et al.
NATURE REVIEWS GENETICS (2016)
Single-Cell-Based Analysis Highlights a Surge in Cell-to-Cell Molecular Variability Preceding Irreversible Commitment in a Differentiation Process
Angelique Richard et al.
PLOS BIOLOGY (2016)
Cell Fate Decision as High-Dimensional Critical State Transition
Mitra Mojtahedi et al.
PLOS BIOLOGY (2016)
Positional information and reaction-diffusion: two big ideas in developmental biology combine
Jeremy B. A. Green et al.
DEVELOPMENT (2015)
Mathematically guided approaches to distinguish models of periodic patterning
Tom W. Hiscock et al.
DEVELOPMENT (2015)
Symmetry breaking, germ layer specification and axial organisation in aggregates of mouse embryonic stem cells
Susanne C. van den Brink et al.
DEVELOPMENT (2014)
Stem cell differentiation as a many-body problem
Bin Zhang et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Topological sensitivity analysis for systems biology
Ann C. Babtie et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Statistical Mechanics of Pluripotency
Ben D. MacArthur et al.
CELL (2013)
Circuit-level input integration in bacterial gene regulation
Lorena Espinar et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Quantifying Cell Fate Decisions for Differentiation and Reprogramming of a Human Stem Cell Network: Landscape and Biological Paths
Chunhe Li et al.
PLOS COMPUTATIONAL BIOLOGY (2013)
Bistability, Bifurcations, and Waddington's Epigenetic Landscape
James E. Ferrell
CURRENT BIOLOGY (2012)
Towards a statistical mechanics of cell fate decisions
Jordi Garcia-Ojalvo et al.
CURRENT OPINION IN GENETICS & DEVELOPMENT (2012)
Functional roles for noise in genetic circuits
Avigdor Eldar et al.
NATURE (2010)
Parameter inference for biochemical systems that undergo a Hopf bifurcation
Paul D. W. Kirk et al.
BIOPHYSICAL JOURNAL (2008)
Cell fates as high-dimensional attractor states of a complex gene regulatory network
S Huang et al.
PHYSICAL REVIEW LETTERS (2005)
Stochastic gene expression in a single cell
MB Elowitz et al.
SCIENCE (2002)