Journal
FEBS LETTERS
Volume 591, Issue 21, Pages 3660-3669Publisher
WILEY
DOI: 10.1002/1873-3468.12868
Keywords
circRNA; conserved; cotton; polyploidization
Funding
- National Key Research and Development Program [2016YFD0100203, 2016YFD0101006]
- National Natural Science Foundation of China (NSFC) [31600989]
- Natural Science Foundation of Jiangsu Province [BK20150653]
- JCIC-MCP project
- National Key Technology R&D Program of China [2013BAD01B03-04]
- Jiangsu Collaborative Innovation Center for Modern Crop Production
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Circular RNA (circRNA) is a regulatory class of long, noncoding RNA found in both plant and animal kingdoms. The profile and characterization of circRNA in cotton species remains to be explored. Here, using 24 rRNA-depleted RNA-seq libraries of putative diploid progenitors of Gossypium spp., Gossypium arboreum and Gossypium raimondii, their interspecies hybrid (F-1) and allotetraploid Gossypium hirsutum, 1041, 1478, 1311, and 499 circRNAs were identified in each cotton species, respectively. A prevalence of 23 exon-circRNAs contain noncanonical GT/AG signals, and only similar to 10% of exon-circRNA is associated with reverse complementary intronic sequences. This result implies that plants employ a method of circRNA splicing distinct from that of animals. In addition, 432 circRNAs are stably expressed in multiple cotton species.
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