4.8 Article

Reproductive phasiRNA loci and DICER-LIKE5, but not microRNA loci, diversified in monocotyledonous plants

Related references

Note: Only part of the references are listed.
Article Multidisciplinary Sciences

Dicer-like 5 deficiency confers temperature-sensitive male sterility in maize

Chong Teng et al.

NATURE COMMUNICATIONS (2020)

Article Multidisciplinary Sciences

24-nt reproductive phasiRNAs are broadly present in angiosperms

Rui Xia et al.

NATURE COMMUNICATIONS (2019)

Article Biochemistry & Molecular Biology

Plant 24-nt reproductive phasiRNAs from intramolecular duplex mRNAs in diverse monocots

Atul Kakrana et al.

GENOME RESEARCH (2018)

Article Biochemistry & Molecular Biology

Revisiting Criteria for Plant MicroRNA Annotation in the Era of Big Data

Michael J. Axtell et al.

PLANT CELL (2018)

Article Biochemistry & Molecular Biology

The Emergence, Evolution, and Diversification of the miR390-TAS3-ARF Pathway in Land Plants

Rui Xia et al.

PLANT CELL (2017)

Article Multidisciplinary Sciences

The asparagus genome sheds light on the origin and evolution of a young Y chromosome

Alex Harkess et al.

NATURE COMMUNICATIONS (2017)

Article Biotechnology & Applied Microbiology

Conservation and divergence of small RNA pathways and microRNAs in land plants

Chenjiang You et al.

GENOME BIOLOGY (2017)

Article Biochemical Research Methods

miTRATA: a web-based tool for microRNA Truncation and Tailing Analysis

Parth Patel et al.

BIOINFORMATICS (2016)

Article Biochemistry & Molecular Biology

The Diversification of Plant NBS-LRR Defense Genes Directs the Evolution of MicroRNAs That Target Them

Yu Zhang et al.

MOLECULAR BIOLOGY AND EVOLUTION (2016)

Article Multidisciplinary Sciences

PMS1T, producing phased small-interfering RNAs, regulates photoperiod-sensitive male sterility in rice

Yourong Fan et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)

Article Genetics & Heredity

Improved Placement of Multi-mapping Small RNAs

Nathan R. Johnson et al.

G3-GENES GENOMES GENETICS (2016)

Article Biochemical Research Methods

PASTA: Ultra-Large Multiple Sequence Alignment for Nucleotide and Amino-Acid Sequences

Siavash Mirarab et al.

JOURNAL OF COMPUTATIONAL BIOLOGY (2015)

Article Multidisciplinary Sciences

Spatiotemporally dynamic, cell-type-dependent premeiotic and meiotic phasiRNAs in maize anthers

Jixian Zhai et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)

Article Biochemistry & Molecular Biology

Asymmetric bulges and mismatches determine 20-nt microRNA formation in plants

Wen-Chi Lee et al.

RNA BIOLOGY (2015)

Article Biochemical Research Methods

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

Alexandros Stamatakis

BIOINFORMATICS (2014)

Article Biochemistry & Molecular Biology

miRBase: annotating high confidence microRNAs using deep sequencing data

Ana Kozomara et al.

NUCLEIC ACIDS RESEARCH (2014)

Article Multidisciplinary Sciences

Sample sequencing of vascular plants demonstrates widespread conservation and divergence of microRNAs

Ricardo A. Chavez Montes et al.

NATURE COMMUNICATIONS (2014)

Review Plant Sciences

Classification and Comparison of Small RNAs from Plants

Michael J. Axtell

ANNUAL REVIEW OF PLANT BIOLOGY, VOL 64 (2013)

Review Biochemistry & Molecular Biology

Phased, Secondary, Small Interfering RNAs in Posttranscriptional Regulatory Networks

Qili Fei et al.

PLANT CELL (2013)

Article Multidisciplinary Sciences

The effects of carbon dioxide and temperature on microRNA expression in Arabidopsis development

Patrick May et al.

NATURE COMMUNICATIONS (2013)

Article Plant Sciences

Roles of DCL4 and DCL3b in rice phased small RNA biogenesis

Xianwei Song et al.

PLANT JOURNAL (2012)

Article Multidisciplinary Sciences

Deep Annotation of Populus trichocarpa microRNAs from Diverse Tissue Sets

Joshua R. Puzey et al.

PLOS ONE (2012)

Article Multidisciplinary Sciences

MicroRNA regulation of plant innate immune receptors

Feng Li et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Review Biochemistry & Molecular Biology

MicroRNA Functions in Stress Responses

Anthony K. L. Leung et al.

MOLECULAR CELL (2010)

Article Biochemistry & Molecular Biology

Unique functionality of 22-nt miRNAs in triggering RDR6-dependent siRNA biogenesis from target transcripts in Arabidopsis

Josh T. Cuperus et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2010)

Article Biochemistry & Molecular Biology

Clusters and superclusters of phased small RNAs in the developing inflorescence of rice

Cameron Johnson et al.

GENOME RESEARCH (2009)

Article Genetics & Heredity

A Genome-Wide Characterization of MicroRNA Genes in Maize

Lifang Zhang et al.

PLOS GENETICS (2009)

Article Biotechnology & Applied Microbiology

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

Ben Langmead et al.

GENOME BIOLOGY (2009)

Article Multidisciplinary Sciences

Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs)

Cheng Lu et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Article Multidisciplinary Sciences

Distinct size distribution of endogenous siRNAs in maize: Evidence from deep sequencing in the mop1-1 mutant

Kan Nobuta et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Article Biochemistry & Molecular Biology

Four plant Dicers mediate viral small RNA biogenesis and DNA virus induced silencing

Todd Blevins et al.

NUCLEIC ACIDS RESEARCH (2006)

Article Multidisciplinary Sciences

Control of leaf morphogenesis by microRNAs

JF Palatnik et al.

NATURE (2003)

Article Plant Sciences

Evolutionary history of the grasses

EA Kellogg

PLANT PHYSIOLOGY (2001)