4.8 Article

Tissue-specific transcriptome profiling of the Arabidopsis inflorescence stem reveals local cellular signatures

Related references

Note: Only part of the references are listed.
Article Biochemistry & Molecular Biology

Arabidopsis shoot stem cells display dynamic transcription and DNA methylation patterns

Ruben Gutzat et al.

EMBO JOURNAL (2020)

Article Biochemistry & Molecular Biology

The RNA Export Factor ALY1 Enables Genome-Wide RNA-Directed DNA Methylation

Sarah G. Choudury et al.

PLANT CELL (2019)

Article Developmental Biology

Bifacial cambium stem cells generate xylem and phloem during radial plant growth

Dongbo Shi et al.

DEVELOPMENT (2019)

Article Multidisciplinary Sciences

Mobile PEAR transcription factors integrate positional cues to prime cambial growth

Shunsuke Miyashima et al.

NATURE (2019)

Article Multidisciplinary Sciences

High levels of auxin signalling define the stem-cell organizer of the vascular cambium

Ondrej Smetana et al.

NATURE (2019)

Article Biochemistry & Molecular Biology

PANTHER version 14: more genomes, a new PANTHER GO-slim and improvements in enrichment analysis tools

Huaiyu Mi et al.

NUCLEIC ACIDS RESEARCH (2019)

Article Plant Sciences

The embryonic transcriptome of Arabidopsis thaliana

Falko Hofmann et al.

PLANT REPRODUCTION (2019)

Review Plant Sciences

The pillars of land plants: new insights into stem development

Antonio Serrano-Mislata et al.

CURRENT OPINION IN PLANT BIOLOGY (2018)

Article Plant Sciences

A Comprehensive Toolkit for Inducible, Cell Type-Specific Gene Expression in Arabidopsis

Ann-Kathrin Schuerholz et al.

PLANT PHYSIOLOGY (2018)

Article Multidisciplinary Sciences

Spatial specificity of auxin responses coordinates wood formation

Klaus Brackmann et al.

NATURE COMMUNICATIONS (2018)

Article Multidisciplinary Sciences

Transcriptional switch for programmed cell death in pith parenchyma of sorghum stems

Masaru Fujimoto et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)

Article Multidisciplinary Sciences

Single-nucleus and single-cell transcriptomes compared in matched cortical cell types

Trygve E. Bakken et al.

PLOS ONE (2018)

Article Biotechnology & Applied Microbiology

SINC-seq: correlation of transient gene expressions between nucleus and cytoplasm reflects single-cell physiology

Mahmoud N. Abdelmoez et al.

GENOME BIOLOGY (2018)

Article Biochemistry & Molecular Biology

Cell Cycle Control by Nuclear Sequestration of CDC20 and CDH1 mRNA in Plant Stem Cells

Weibing Yang et al.

MOLECULAR CELL (2017)

Article Plant Sciences

Araport11: a complete reannotation of the Arabidopsis thaliana reference genome

Chia-Yi Cheng et al.

PLANT JOURNAL (2017)

Article Biochemistry & Molecular Biology

Strigolactone- and Karrikin-Independent SMXL Proteins Are Central Regulators of Phloem Formation

Eva-Sophie Wallner et al.

CURRENT BIOLOGY (2017)

Review Plant Sciences

Mapping Transcriptional Networks in Plants: Data-Driven Discovery of Novel Biological Mechanisms

Allison Gaudinier et al.

ANNUAL REVIEW OF PLANT BIOLOGY, VOL 67 (2016)

Article Biochemistry & Molecular Biology

Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape

Ronan C. O'Malley et al.

Article Plant Sciences

MOL1 is required for cambium homeostasis in Arabidopsis

Nial Rau Gursanscky et al.

PLANT JOURNAL (2016)

Article Biotechnology & Applied Microbiology

Analysis of intronic and exonic reads in RNA-seq data characterizes transcriptional and post-transcriptional regulation

Dimos Gaidatzis et al.

NATURE BIOTECHNOLOGY (2015)

Article Developmental Biology

A high-resolution gene expression map of the Arabidopsis shoot meristem stem cell niche

Ram Kishor Yadav et al.

DEVELOPMENT (2014)

Article Developmental Biology

Cell type-specific transcriptome analysis in the early Arabidopsis thaliana embryo

Daniel Slane et al.

DEVELOPMENT (2014)

Article Biochemical Research Methods

A simple improved-throughput xylem protoplast system for studying wood formation

Ying-Chung Lin et al.

NATURE PROTOCOLS (2014)

Article Multidisciplinary Sciences

Contribution of NAC Transcription Factors to Plant Adaptation to Land

Bo Xu et al.

SCIENCE (2014)

Article Multidisciplinary Sciences

Arabidopsis NAC45/86 direct sieve element morphogenesis culminating in enucleation

Kaori Miyashima Furuta et al.

SCIENCE (2014)

Article Biotechnology & Applied Microbiology

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

Michael I. Love et al.

GENOME BIOLOGY (2014)

Article Biochemical Research Methods

STAR: ultrafast universal RNA-seq aligner

Alexander Dobin et al.

BIOINFORMATICS (2013)

Article Biochemical Research Methods

Smart-seq2 for sensitive full-length transcriptome profiling in single cells

Simone Picelli et al.

NATURE METHODS (2013)

Article Biochemistry & Molecular Biology

NCBI GEO: archive for functional genomics data sets-update

Tanya Barrett et al.

NUCLEIC ACIDS RESEARCH (2013)

Article Multidisciplinary Sciences

GreenGate - A Novel, Versatile, and Efficient Cloning System for Plant Transgenesis

Athanasios Lampropoulos et al.

PLOS ONE (2013)

Article Biochemical Research Methods

Software for Computing and Annotating Genomic Ranges

Michael Lawrence et al.

PLOS COMPUTATIONAL BIOLOGY (2013)

Article Biochemical Research Methods

An accurate paired sample test for count data

Thang V. Pham et al.

BIOINFORMATICS (2012)

Article Biochemistry & Molecular Biology

The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools

Philippe Lamesch et al.

NUCLEIC ACIDS RESEARCH (2012)

Review Plant Sciences

From thin to thick: major transitions during stem development

Pablo Sanchez et al.

TRENDS IN PLANT SCIENCE (2012)

Article Biochemistry & Molecular Biology

WOX4 Imparts Auxin Responsiveness to Cambium Cells in Arabidopsis

Stefanie Suer et al.

PLANT CELL (2011)

Article Multidisciplinary Sciences

Strigolactone signaling is required for auxin-dependent stimulation of secondary growth in plants

Javier Agusti et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Article Biochemistry & Molecular Biology

Global Analysis of Direct Targets of Secondary Wall NAC Master Switches in Arabidopsis

Ruiqin Zhong et al.

MOLECULAR PLANT (2010)

Article Biotechnology & Applied Microbiology

Transcriptional regulation of secondary wall formation controlled by NAC domain proteins

Masatoshi Yamaguchi et al.

PLANT BIOTECHNOLOGY (2010)

Article Biochemistry & Molecular Biology

VND-INTERACTING2, a NAC Domain Transcription Factor, Negatively Regulates Xylem Vessel Formation in Arabidopsis

Masatoshi Yamaguchi et al.

PLANT CELL (2010)

Article Plant Sciences

Real-Time Imaging of Cellulose Reorientation during Cell Wall Expansion in Arabidopsis Roots

Charles T. Anderson et al.

PLANT PHYSIOLOGY (2010)

Article Multidisciplinary Sciences

Laser microdissection of Arabidopsis cells at the powdery mildew infection site reveals site-specific processes and regulators

Divya Chandran et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Article Multidisciplinary Sciences

Gene expression map of the Arabidopsis shoot apical meristem stem cell niche

Ram Kishor Yadav et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)

Article Multidisciplinary Sciences

Non-cell-autonomous control of vascular stem cell fate by a CLE peptide/receptor system

Yuki Hirakawa et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Article Multidisciplinary Sciences

A high-resolution root spatiotemporal map reveals dominant expression patterns

Siobhan M. Brady et al.

SCIENCE (2007)

Article Biochemistry & Molecular Biology

PXY, a receptor-like kinase essential for maintaining polarity during plant vascular-tissue development

Kate Fisher et al.

CURRENT BIOLOGY (2007)

Article Multidisciplinary Sciences

Transcriptional and posttranscriptional regulation of transcription factor expression in Arabidopsis roots

JY Lee et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)

Article Cell Biology

Transcription switches for protoxylem and metaxylem vessel formation

M Kubo et al.

GENES & DEVELOPMENT (2005)

Article Multidisciplinary Sciences

A gene expression map of the Arabidopsis root

K Birnbaum et al.

SCIENCE (2003)

Article Multidisciplinary Sciences

APL regulates vascular tissue identity in Arabidopsis

M Bonke et al.

NATURE (2003)

Review Multidisciplinary Sciences

Analysis of the genome sequence of the flowering plant Arabidopsis thaliana

S Kaul et al.

NATURE (2000)

Article Biochemistry & Molecular Biology

pGreen:: a versatile and flexible binary Ti vector for Agrobacterium-mediated plant transformation

RP Hellens et al.

PLANT MOLECULAR BIOLOGY (2000)

Article Multidisciplinary Sciences

FIDDLEHEAD, a gene required to suppress epidermal cell interactions in Arabidopsis, encodes a putative lipid biosynthetic enzyme

RE Pruitt et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2000)