Journal
MOLECULAR BIOLOGY AND EVOLUTION
Volume 38, Issue 9, Pages 4039-4042Publisher
OXFORD UNIV PRESS
DOI: 10.1093/molbev/msab166
Keywords
phylogeny; data integration; data visualization; software
Funding
- National Key R&D Program of China [2016YFC0901600]
- National Natural Science Foundation of China [81971895]
- Special Support Plan for Outstanding Talents of Guangdong Province [2019JC05Y340]
- Southern Medical University
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ggtreeExtra is a universal tool for visualizing tree data, supporting various data types and visualization methods. By integrating evolutionary statistics and external data, it extends the applications of phylogenetic trees in different disciplines.
We present the ggtreeExtra package for visualizing heterogeneous data with a phylogenetic tree in a circular or rectangular layout (https://www.bioconductor.org/packages/ggtreeExtra). The package supports more data types and visualization methods than other tools. It supports using the grammar of graphics syntax to present data on a tree with richly annotated layers and allows evolutionary statistics inferred by commonly used software to be integrated and visualized with external data. GgtreeExtra is a universal tool for tree data visualization. It extends the applications of the phylogenetic tree in different disciplines by making more domain-specific data to be available to visualize and interpret in the evolutionary context.
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