Related references
Note: Only part of the references are listed.NMFGO: Gene Function Prediction via Nonnegative Matrix Factorization with Gene Ontology
Guoxian Yu et al.
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS (2020)
NewGOA: Predicting New GO Annotations of Proteins by Bi-Random Walks on a Hybrid Graph
Guoxian Yu et al.
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS (2018)
deepNF: deep network fusion for protein function prediction
Vladimir Gligorijevic et al.
BIOINFORMATICS (2018)
Modeling polypharmacy side effects with graph convolutional networks
Marinka Zitnik et al.
BIOINFORMATICS (2018)
Matrix factorization-based data fusion for the prediction of lncRNA-disease associations
Guangyuan Fu et al.
BIOINFORMATICS (2018)
Multi-View Network Embedding Via Graph Factorization Clustering and Co-Regularized Multi-View Agreement
Yiwei Sun et al.
2018 18TH IEEE INTERNATIONAL CONFERENCE ON DATA MINING WORKSHOPS (ICDMW) (2018)
DeepGO: predicting protein functions from sequence and interactions using a deep ontology-aware classifier
Maxat Kulmanov et al.
BIOINFORMATICS (2018)
Predicting Protein Function via Semantic Integration of Multiple Networks
Guoxian Yu et al.
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS (2016)
Compact Integration of Multi-Network Topology for Functional Analysis of Genes
Hyunghoon Cho et al.
CELL SYSTEMS (2016)
Integrating multiple networks for protein function prediction
Guoxian Yu et al.
BMC SYSTEMS BIOLOGY (2015)
Predicting Protein Function Using Multiple Kernels
Guoxian Yu et al.
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS (2015)
IMP 2.0: a multi-species functional genomics portal for integration, visualization and prediction of protein functions and networks
Aaron K. Wong et al.
NUCLEIC ACIDS RESEARCH (2015)
Gene Function Prediction from Functional Association Networks Using Kernel Partial Least Squares Regression
Sonja Lehtinen et al.
PLOS ONE (2015)
New directions for diffusion-based network prediction of protein function: incorporating pathways with confidence
Mengfei Cao et al.
BIOINFORMATICS (2014)
Similarity network fusion for aggregating data types on a genomic scale
Bo Wang et al.
NATURE METHODS (2014)
Genetic Interaction Networks: Toward an Understanding of Heritability
Anastasia Baryshnikova et al.
ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS, VOL 14 (2013)
Protein function prediction by massive integration of evolutionary analyses and multiple data sources
Domenico Cozzetto et al.
BMC BIOINFORMATICS (2013)
Computational solutions for omics data
Bonnie Berger et al.
NATURE REVIEWS GENETICS (2013)
STRING v9.1: protein-protein interaction networks, with increased coverage and integration
Andrea Franceschini et al.
NUCLEIC ACIDS RESEARCH (2013)
CombFunc: predicting protein function using heterogeneous data sources
Mark N. Wass et al.
NUCLEIC ACIDS RESEARCH (2012)
Prioritizing candidate disease genes by network-based boosting of genome-wide association data
Insuk Lee et al.
GENOME RESEARCH (2011)
Analysis of protein function and its prediction from amino acid sequence
Wyatt T. Clark et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2011)
Fast integration of heterogeneous data sources for predicting gene function with limited annotation
Sara Mostafavi et al.
BIOINFORMATICS (2010)
Integration of heterogeneous data sources for gene function prediction using decision templates and ensembles of learning machines
Matteo Re et al.
NEUROCOMPUTING (2010)
A Genome-Wide Gene Function Prediction Resource for Drosophila melanogaster
Han Yan et al.
PLOS ONE (2010)
GeneMANIA: a real-time multiple association network integration algorithm for predicting gene function
Sara Mostafavi et al.
GENOME BIOLOGY (2008)
Network-based prediction of protein function
Roded Sharan et al.
MOLECULAR SYSTEMS BIOLOGY (2007)
A scalable method for integration and functional analysis of multiple microarray datasets
Curtis Huttenhower et al.
BIOINFORMATICS (2006)
Fast protein classification with multiple networks
K Tsuda et al.
BIOINFORMATICS (2005)
Inference of protein function from protein structure
D Pal et al.
STRUCTURE (2005)
The FunCat, a functional annotation scheme for systematic classification of proteins from whole genomes
A Ruepp et al.
NUCLEIC ACIDS RESEARCH (2004)
A statistical framework for genomic data fusion
GRG Lanckriet et al.
BIOINFORMATICS (2004)
A gene-coexpression network for global discovery of conserved genetic modules
JM Stuart et al.
SCIENCE (2003)