4.6 Article Proceedings Paper

A tool for analyzing and visualizing ribo-seq data at the isoform level

Related references

Note: Only part of the references are listed.
Article Biochemical Research Methods

Computational resources for ribosome profiling: from database to Web server and software

Hongwei Wang et al.

BRIEFINGS IN BIOINFORMATICS (2019)

Article Biochemistry & Molecular Biology

Insights into the mechanisms of eukaryotic translation gained with ribosome profiling

Dmitry E. Andreev et al.

NUCLEIC ACIDS RESEARCH (2017)

Article Biochemical Research Methods

Isoform-level ribosome occupancy estimation guided by transcript abundance with Ribomap

Hao Wang et al.

BIOINFORMATICS (2016)

Article Biochemical Research Methods

RiboTools: a Galaxy toolbox for qualitative ribosome profiling analysis

Rachel Legendre et al.

BIOINFORMATICS (2015)

Article Biochemistry & Molecular Biology

The Translational Landscape of the Mammalian Cell Cycle

Craig R. Stumpf et al.

MOLECULAR CELL (2013)

Article Cell Biology

Translational Control in Cancer Etiology

Davide Ruggero

COLD SPRING HARBOR PERSPECTIVES IN BIOLOGY (2013)

Article Biochemistry & Molecular Biology

Observation of dually decoded regions of the human genome using ribosome profiling data

Audrey M. Michel et al.

GENOME RESEARCH (2012)

Article Cell Biology

Principles of Translational Control: An Overview

John W. B. Hershey et al.

COLD SPRING HARBOR PERSPECTIVES IN BIOLOGY (2012)

Article Biochemical Research Methods

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

Bo Li et al.

BMC BIOINFORMATICS (2011)

Letter Biotechnology & Applied Microbiology

Integrative genomics viewer

James T. Robinson et al.

NATURE BIOTECHNOLOGY (2011)

Article Biochemical Research Methods

RNA-Seq gene expression estimation with read mapping uncertainty

Bo Li et al.

BIOINFORMATICS (2010)

Article Multidisciplinary Sciences

Mammalian microRNAs predominantly act to decrease target mRNA levels

Huili Guo et al.

NATURE (2010)

Review Cell Biology

The mechanism of eukaryotic translation initiation and principles of its regulation

Richard J. Jackson et al.

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2010)

Review Biochemistry & Molecular Biology

Translational control of eukaryotic gene expression

Katrien Van Der Kelen et al.

CRITICAL REVIEWS IN BIOCHEMISTRY AND MOLECULAR BIOLOGY (2009)

Article Multidisciplinary Sciences

Genome-Wide Analysis in Vivo of Translation with Nucleotide Resolution Using Ribosome Profiling

Nicholas T. Ingolia et al.

SCIENCE (2009)

Article Biotechnology & Applied Microbiology

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

Ben Langmead et al.

GENOME BIOLOGY (2009)