Related references
Note: Only part of the references are listed.Widespread Recombination Suppression Facilitates Plant Sex Chromosome Evolution
Joanna L. Rifkin et al.
MOLECULAR BIOLOGY AND EVOLUTION (2021)
High-quality chromosome-level genomes of two tilapia species reveal their evolution of repeat sequences and sex chromosomes
Wenjing Tao et al.
MOLECULAR ECOLOGY RESOURCES (2021)
Identifying the causes and consequences of assembly gaps using a multiplatform genome assembly of a bird-of-paradise
Valentina Peona et al.
MOLECULAR ECOLOGY RESOURCES (2021)
Liftoff: accurate mapping of gene annotations
Alaina Shumate et al.
BIOINFORMATICS (2021)
A new emu genome illuminates the evolution of genome configuration and nuclear architecture of avian chromosomes
Jing Liu et al.
GENOME RESEARCH (2021)
Origin of a Giant Sex Chromosome
Matthew A. Conte et al.
MOLECULAR BIOLOGY AND EVOLUTION (2021)
Chromosome-scale, haplotype-resolved assembly of human genomes
Shilpa Garg et al.
NATURE BIOTECHNOLOGY (2021)
A high-quality de novo genome assembly of one swamp eel (Monopterus albus) strain with PacBio and Hi-C sequencing data
Hai-Feng Tian et al.
G3-GENES GENOMES GENETICS (2021)
When and how do sex-linked regions become sex chromosomes?
Deborah Charlesworth
EVOLUTION (2021)
Chromosome-scale assembly of the genome of Salix dunnii reveals a male-heterogametic sex determination system on chromosome 7
Li He et al.
MOLECULAR ECOLOGY RESOURCES (2021)
Haplotype-resolved de novo assembly using phased assembly graphs with hifiasm
Haoyu Cheng et al.
NATURE METHODS (2021)
The structure, function and evolution of a complete human chromosome 8
Glennis A. Logsdon et al.
NATURE (2021)
Towards complete and error-free genome assemblies of all vertebrate species
Arang Rhie et al.
NATURE (2021)
Predicting the Landscape of Recombination Using Deep Learning
Jeffrey R. Adrion et al.
MOLECULAR BIOLOGY AND EVOLUTION (2020)
IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era
Bui Quang Minh et al.
MOLECULAR BIOLOGY AND EVOLUTION (2020)
Characterization of a Y-specific duplication/insertion of the anti-Mullerian hormone type II receptor gene based on a chromosome-scale genome assembly of yellow perch, Perca flavescens
Romain Feron et al.
MOLECULAR ECOLOGY RESOURCES (2020)
Heterochromatin establishment during early mammalian development is regulated by pericentromeric RNA and characterized by non-repressive H3K9me3
Adam Burton et al.
NATURE CELL BIOLOGY (2020)
The Female-Specific W Chromosomes of Birds Have Conserved Gene Contents but Are Not Feminized
Luohao Xu et al.
GENES (2020)
Comparison of the two up-to-date sequencing technologies for genome assembly: HiFi reads of Pacific Biosciences Sequel II system and ultralong reads of Oxford Nanopore
Dandan Lang et al.
GIGASCIENCE (2020)
Simultaneous epigenetic perturbation and genome imaging reveal distinct roles of H3K9me3 in chromatin architecture and transcription
Ying Feng et al.
GENOME BIOLOGY (2020)
Screening and characterization of sex-specific markers by 2b-RAD sequencing in zig-zag eel (Mastacembelus armatus) with implication of XY sex determination system
Ling-Zhan Xue et al.
AQUACULTURE (2020)
Assembly of the threespine stickleback Y chromosome reveals convergent signatures of sex chromosome evolution
Catherine L. Peichel et al.
GENOME BIOLOGY (2020)
Genetic and cytological analyses reveal the recombination landscape of a partially differentiated plant sex chromosome in kiwifruit
S. M. Pilkington et al.
BMC PLANT BIOLOGY (2019)
Vision using multiple distinct rod opsins in deep-sea fishes
Zuzana Musilova et al.
SCIENCE (2019)
Centromeric Satellite DNAs: Hidden Sequence Variation in the Human Population
Karen H. Miga
GENES (2019)
Dynamic evolutionary history and gene content of sex chromosomes across diverse songbirds
Luohao Xu et al.
NATURE ECOLOGY & EVOLUTION (2019)
Heterochromatin drives compartmentalization of inverted and conventional nuclei
Martin Falk et al.
NATURE (2019)
Young sex chromosomes in plants and animals
Deborah Charlesworth
NEW PHYTOLOGIST (2019)
CUT&Tag for efficient epigenomic profiling of small samples and single cells
Hatice S. Kaya-Okur et al.
NATURE COMMUNICATIONS (2019)
Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome
Aaron M. Wenger et al.
NATURE BIOTECHNOLOGY (2019)
Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype
Daehwan Kim et al.
NATURE BIOTECHNOLOGY (2019)
Chromosome genome assembly and annotation of the yellowbelly pufferfish with PacBio and Hi-C sequencing data
Yitao Zhou et al.
SCIENTIFIC DATA (2019)
RaGOO: fast and accurate reference-guided scaffolding of draft genomes
Michael Alonge et al.
GENOME BIOLOGY (2019)
Haplotype-aware diplotyping from noisy long reads
Jana Ebler et al.
GENOME BIOLOGY (2019)
Minimap2: pairwise alignment for nucleotide sequences
Heng Li
BIOINFORMATICS (2018)
Chromosome-scale assembly of the Monopterus genome
Xueya Zhao et al.
GIGASCIENCE (2018)
Pilot satellitome analysis of the model plant, Physcomitrella patens, revealed a transcribed and high-copy IGS related tandem repeat
Ilya Kirov et al.
COMPARATIVE CYTOGENETICS (2018)
Evolutionary conservation of Y Chromosome ampliconic gene families despite extensive structural variation
Wesley A. Brashear et al.
GENOME RESEARCH (2018)
De novo assembly of haplotype-resolved genomes with trio binning
Sergey Koren et al.
NATURE BIOTECHNOLOGY (2018)
HapCUT2: robust and accurate haplotype assembly for diverse sequencing technologies
Peter Edge et al.
GENOME RESEARCH (2017)
An improved ATAC-seq protocol reduces background and enables interrogation of frozen tissues
M. Ryan Corces et al.
NATURE METHODS (2017)
De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds
Olga Dudchenko et al.
SCIENCE (2017)
Y and W Chromosome Assemblies: Approaches and Discoveries
Marta Tomaszkiewicz et al.
TRENDS IN GENETICS (2017)
Chromosomal stasis in distinct families of marine Percomorpharia from South Atlantic
Fabilene Gomes Paim et al.
COMPARATIVE CYTOGENETICS (2017)
Dynamics of vertebrate sex chromosome evolution: from equal size to giants and dwarfs
Manfred Schartl et al.
CHROMOSOMA (2016)
Juicer Provides a One-Click System for Analyzing Loop-Resolution Hi-C Experiments
Neva C. Durand et al.
CELL SYSTEMS (2016)
Juicebox Provides a Visualization System for Hi-C Contact Maps with Unlimited Zoom
Neva C. Durand et al.
CELL SYSTEMS (2016)
WHATSHAP: Weighted Haplotype Assembly for Future-Generation Sequencing Reads
Murray Patterson et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2015)
Tissue-based map of the human proteome
Mathias Uhlen et al.
SCIENCE (2015)
Constitutive heterochromatin formation and transcription in mammals
Nehme Saksouk et al.
EPIGENETICS & CHROMATIN (2015)
Gateways to the FANTOM5 promoter level mammalian expression atlas
Marina Lizio et al.
GENOME BIOLOGY (2015)
featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
Yang Liao et al.
BIOINFORMATICS (2014)
Mammalian Y chromosomes retain widely expressed dosage-sensitive regulators
Daniel W. Bellott et al.
NATURE (2014)
Origins and functional evolution of Y chromosomes across mammals
Diego Cortez et al.
NATURE (2014)
Complex evolutionary trajectories of sex chromosomes across bird taxa
Qi Zhou et al.
SCIENCE (2014)
Sex Determination: Why So Many Ways of Doing It?
Doris Bachtrog et al.
PLOS BIOLOGY (2014)
Heterochromatin Blocks Constituting the Entire Short Arms of Acrocentric Chromosomes of Azara's Owl Monkey: Formation Processes Inferred From Chromosomal Locations
Ornjira Prakhongcheep et al.
DNA RESEARCH (2013)
Y-chromosome evolution: emerging insights into processes of Y-chromosome degeneration
Doris Bachtrog
NATURE REVIEWS GENETICS (2013)
Comparative analysis of tandem repeats from hundreds of species reveals unique insights into centromere evolution
Daniel P. Melters et al.
GENOME BIOLOGY (2013)
Identification of avian W-linked contigs by short-read sequencing
Nancy Chen et al.
BMC GENOMICS (2012)
A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3
Pablo Cingolani et al.
FLY (2012)
Genome-wide efficient mixed-model analysis for association studies
Xiang Zhou et al.
NATURE GENETICS (2012)
Fast gapped-read alignment with Bowtie 2
Ben Langmead et al.
NATURE METHODS (2012)
Transitions Between Sex-Determining Systems in Reptiles and Amphibians
Stephen D. Sarre et al.
ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS, VOL 12 (2011)
Adaptive seeds tame genomic sequence comparison
Szymon M. Kielbasa et al.
GENOME RESEARCH (2011)
Sex-chromosome evolution: recent progress and the influence of male and female heterogamety
Hans Ellegren
NATURE REVIEWS GENETICS (2011)
A Novel Mouse Synaptonemal Complex Protein Is Essential for Loading of Central Element Proteins, Recombination, and Fertility
Sabine Schramm et al.
PLOS GENETICS (2011)
HMGN5/NSBP1: A new member of the HMGN protein family that affects chromatin structure and function
Mark Rochman et al.
BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS (2010)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
DNA methylation and heterochromatinization in the male-specific region of the primitive Y chromosome of papaya
Wenli Zhang et al.
GENOME RESEARCH (2008)
Model-based Analysis of ChIP-Seq (MACS)
Yong Zhang et al.
GENOME BIOLOGY (2008)
Steps in the evolution of heteromorphic sex chromosomes
D Charlesworth et al.
HEREDITY (2005)
Two novel proteins recruited by synaptonemal complex protein 1 (SYCP1) are at the centre of meiosis
Y Costa et al.
JOURNAL OF CELL SCIENCE (2005)
Aligning multiple genomic sequences with the threaded blockset aligner
M Blanchette et al.
GENOME RESEARCH (2004)
The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes
H Skaletsky et al.
NATURE (2003)
The rice field eel as a model system for vertebrate sexual development
H Cheng et al.
CYTOGENETIC AND GENOME RESEARCH (2003)
Sex chromosomes in the spiny eel (Mastacembelus aculeatus) revealed by mitotic and meiotic analysis
JD Liu et al.
CYTOGENETIC AND GENOME RESEARCH (2002)
Share Paper
