Journal
JOURNAL OF NEMATOLOGY
Volume 53, Issue -, Pages 1-6Publisher
SOC NEMATOLOGISTS
DOI: 10.21307/jofnem-2021-065
Keywords
Genomics; Illumina; Mitogenome; Nanopore sequencing; Nuclear genome; Root-knot nematode
Categories
Funding
- Consultative Group for International Agricultural Research Program on rice-agrifood systems (CRP-RICE, 2017-2022)
- French Embassy in Vietnam
- LABEX Agro [ANR-10-LABX-001-01]
- LABEX TULIP [ANR-10-LABX-0041]
- CEBA [ANR-10-LABX-25-01]
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This study presents a high-quality genome sequence of Meloidogyne exigua, a major pathogen of coffee in Costa Rica. The nuclear genome was constructed with 206 contigs, providing valuable data for understanding the pathogenic mechanism of this nematode species.
Root-knot nematodes (Meloidogyne spp.) cause serious damages on most crops. Here, we report a high-quality genome sequence of Meloidogyne exigua (population Mex1, Costa Rica), a major pathogen of coffee. Its mitogenome (20,974 bp) was first assembled and annotated. The nuclear genome was then constructed consisting of 206 contigs, with an N50 length of 1.89 Mb and a total assembly length of 42.1 Mb.
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