Journal
STAR PROTOCOLS
Volume 2, Issue 3, Pages -Publisher
ELSEVIER
DOI: 10.1016/j.xpro.2021.100800
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Funding
- NIH [U54 GM103511, R01 GM112108, P41 GM109824, P41 GM103314]
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The presented method utilizes protein tagging, conditional expression, SILAC labeling, and affinity purification techniques to comprehensively track the dynamics of protein complexes in yeast cells, allowing for determination and distinction of subunit turnover and exchange.
We present a comprehensive and robust protocol to track the dynamics of all proteins in a complex in yeast cells. A single member of the protein assembly is tagged and conditionally expressed, minimizing the perturbations to the protein complex. Then, SILAC labeling and affinity purification are used for the assessment of the whole protein complex dynamics. This method can determine and distinguish both subunit turnover and exchange specifically in an assembly to provide a comprehensive picture of assembly dynamics. For complete details on the use and execution of this protocol, please refer to Hakhverdyan et al. (2021).
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