Related references
Note: Only part of the references are listed.UDSMProt: universal deep sequence models for protein classification
Nils Strodthoff et al.
BIOINFORMATICS (2020)
To Cleave or Not To Cleave in XL-MS?
B. Steigenberger et al.
JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY (2020)
Structure, Function, and Antigenicity of the SARS-CoV-2 Spike Glycoprotein
Alexandra C. Walls et al.
CELL (2020)
Cryo-EM structures from sub-nl volumes using pin-printing and jet vitrification
Raimond B. G. Ravelli et al.
NATURE COMMUNICATIONS (2020)
Time-resolved cryo-EM using Spotiton
Venkata P. Dandey et al.
NATURE METHODS (2020)
Single-particle cryo-EM at atomic resolution
Takanori Nakane et al.
NATURE (2020)
A beta-barrel for oil transport through lipid membranes: Dynamic NMR structures of AlkL
Tobias Schubeis et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)
Role of integrative structural biology in understanding transcriptional initiation
Michael J. Trnka et al.
METHODS (2019)
Snapshot of an oxygen intermediate in the catalytic reaction of cytochrome c oxidase
Izumi Ishigami et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)
Network-based prediction of protein interactions
Istvan A. Kovacs et al.
NATURE COMMUNICATIONS (2019)
Protein Structure Determination in Living Cells
Teppei Ikeya et al.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2019)
Late steps in bacterial translation initiation visualized using time-resolved cryo-EM
Sandip Kaledhonkar et al.
NATURE (2019)
Yosshi: a web-server for disulfide engineering by bioinformatic analysis of diverse protein families
Dmitry Suplatov et al.
NUCLEIC ACIDS RESEARCH (2019)
A Simple Cross-Linking/Mass Spectrometry Workflow for Studying System-wide Protein Interactions
Michael Goetze et al.
ANALYTICAL CHEMISTRY (2019)
Differential Visual Proteomics: Enabling the Proteome-Wide Comparison of Protein Structures of Single-Cells
Anastasia Syntychaki et al.
JOURNAL OF PROTEOME RESEARCH (2019)
AgarFix: Simple and accessible stabilization of challenging single-particle cryo-EM specimens through crosslinking in a matrix of agar
Klaudia Adamus et al.
JOURNAL OF STRUCTURAL BIOLOGY (2019)
Systems structural biology measurements by in vivo cross-linking with mass spectrometry
Juan D. Chavez et al.
NATURE PROTOCOLS (2019)
The structural basis for release-factor activation during translation termination revealed by time-resolved cryogenic electron microscopy
Ziao Fu et al.
NATURE COMMUNICATIONS (2019)
Predicting Protein-Protein Interactions from Matrix-Based Protein Sequence Using Convolution Neural Network and Feature-Selective Rotation Forest
Lei Wang et al.
SCIENTIFIC REPORTS (2019)
Evaluation of template-based modeling in CASP13
Tristan I. Croll et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2019)
Integrative Approaches in Structural Biology: A More Complete Picture from the Combination of Individual Techniques
Linda Cerofolini et al.
BIOMOLECULES (2019)
Protein structure prediction using multiple deep neural networks in the 13th Critical Assessment of Protein Structure Prediction (CASP13)
Andrew W. Senior et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2019)
Assessment of chemical-crosslink-assisted protein structure modeling in CASP13
J. Eduardo Fajardo et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2019)
Recent developments in deep learning applied to protein structure prediction
Shaun M. Kandathil et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2019)
Critical assessment of methods of protein structure prediction (CASP)-Round XIII
Andriy Kryshtafovych et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2019)
Multimodal deep representation learning for protein interaction identification and protein family classification
Da Zhang et al.
BMC BIOINFORMATICS (2019)
VMXi: a fully automated, fully remote, high-flux insitu macromolecular crystallography beamline
Juan Sanchez-Weatherby et al.
JOURNAL OF SYNCHROTRON RADIATION (2019)
In-cell NMR: from metabolites to macromolecules
G. Lippens et al.
ANALYST (2018)
Small angle X-ray scattering and cross-linking for data assisted protein structure prediction in CASP 12 with prospects for improved accuracy
Tadeusz L. Ogorzalek et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2018)
Development of a Prototype System for Archiving Integrative/Hybrid Structure Models of Biological Macromolecules
Brinda Vallat et al.
STRUCTURE (2018)
Evolution of higher torque in Campylobacter-type bacterial flagellar motors
Bonnie Chaban et al.
SCIENTIFIC REPORTS (2018)
Routine single particle cryoEM sample and grid characterization by tomography
Alex J. Noble et al.
ELIFE (2018)
Biological small-angle neutron scattering: recent results and development
Emilie Mahieu et al.
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2018)
Integrative structure and functional anatomy of a nuclear pore complex
Seung Joong Kim et al.
NATURE (2018)
Cross-Linking Mass Spectrometry: An Emerging Technology for Interactomics and Structural Biology
Clinton Yu et al.
ANALYTICAL CHEMISTRY (2018)
The Rosetta All-Atom Energy Function for Macromolecular Modeling and Design
Rebecca F. Alford et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2017)
In-Culture Cross-Linking of Bacterial Cells Reveals Large-Scale Dynamic Protein-Protein Interactions at the Peptide Level
Luitzen de Jong et al.
JOURNAL OF PROTEOME RESEARCH (2017)
Blotting-free and lossless cryo-electron microscopy grid preparation from nanoliter-sized protein samples and single-cell extracts
Stefan A. Arnold et al.
JOURNAL OF STRUCTURAL BIOLOGY (2017)
Quantifying receptor trafficking and colocalization with confocal microscopy
Jeremy A. Pike et al.
METHODS (2017)
Capturing protein communities by structural proteomics in a thermophilic eukaryote
Panagiotis L. Kastritis et al.
MOLECULAR SYSTEMS BIOLOGY (2017)
A cell is more than the sum of its (dilute) parts: A brief history of quinary structure
Rachel D. Cohen et al.
PROTEIN SCIENCE (2017)
In-cell NMR: a topical review
Enrico Luchinat et al.
IUCRJ (2017)
Structure of the hexagonal surface layer on Caulobacter crescentus cells
Tanmay A. M. Bharat et al.
NATURE MICROBIOLOGY (2017)
High-resolution cryo-EM: the nuts and bolts
Dominika Elmlund et al.
CURRENT OPINION IN STRUCTURAL BIOLOGY (2017)
Applications of solid-state NMR to membrane proteins
Vladimir Ladizhansky
BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS (2017)
Visualization of cytosolic ribosomes on the surface of mitochondria by electron cryo-tomography
Vicki A. M. Gold et al.
EMBO REPORTS (2017)
Generalized single-particle cryo-EM - a historical perspective
Joachim Frank
MICROSCOPY (2016)
Recent excitements in protein NMR: Large proteins and biologically relevant dynamics
Sai Chaitanya Chiliveri et al.
JOURNAL OF BIOSCIENCES (2016)
Structure Determination of the Nuclear Pore Complex with Three-Dimensional Cryo electron Microscopy
Alexander von Appen et al.
JOURNAL OF MOLECULAR BIOLOGY (2016)
A new method for vitrifying samples for cryoEM
Ivan Razinkov et al.
JOURNAL OF STRUCTURAL BIOLOGY (2016)
Nuclear magnetic resonance (NMR) applied to membrane-protein complexes
Mohammed Kaplan et al.
QUARTERLY REVIEWS OF BIOPHYSICS (2016)
Protein dynamics and function from solution state NMR spectroscopy
Michael Kovermann et al.
QUARTERLY REVIEWS OF BIOPHYSICS (2016)
An atomic model of HIV-1 capsid-SP1 reveals structures regulating assembly and maturation
Florian K. M. Schur et al.
SCIENCE (2016)
Cryo-Electron Tomography: Can it Reveal the Molecular Sociology of Cells in Atomic Detail?
Martin Beck et al.
TRENDS IN CELL BIOLOGY (2016)
In-vacuum long-wavelength macromolecular crystallography
Armin Wagner et al.
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2016)
EIGER detector: application in macromolecular crystallography
Arnau Casanas et al.
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2016)
Real-time protein NMR spectroscopy and investigation of assisted protein folding
Amit Kumar et al.
BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS (2015)
Interrogating the architecture of protein assemblies and protein interaction networks by cross-linking mass spectrometry
Fan Liu et al.
CURRENT OPINION IN STRUCTURAL BIOLOGY (2015)
The Phyre2 web portal for protein modeling, prediction and analysis
Lawrence A. Kelley et al.
NATURE PROTOCOLS (2015)
MASSIF-1: a beamline dedicated to the fully automatic characterization and data collection from crystals of biological macromolecules
Matthew W. Bowler et al.
JOURNAL OF SYNCHROTRON RADIATION (2015)
ZDOCK server: interactive docking prediction of protein-protein complexes and symmetric multimers
Brian G. Pierce et al.
BIOINFORMATICS (2014)
iPfam: a database of protein family and domain interactions found in the Protein Data Bank
Robert D. Finn et al.
NUCLEIC ACIDS RESEARCH (2014)
Non-Redundant Unique Interface Structures as Templates for Modeling Protein Interactions
Engin Cukuroglu et al.
PLOS ONE (2014)
Volta potential phase plate for in-focus phase contrast transmission electron microscopy
Radostin Danev et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
The Resolution Revolution
Werner Kuehlbrandt
SCIENCE (2014)
Breaking the Radiation Damage Limit with Cryo-SAXS
Steve P. Meisburger et al.
BIOPHYSICAL JOURNAL (2013)
Disulfide by Design 2.0: a web-based tool for disulfide engineering in proteins
Douglas B. Craig et al.
BMC BIOINFORMATICS (2013)
DOT2: Macromolecular docking with improved biophysical models
Victoria A. Roberts et al.
JOURNAL OF COMPUTATIONAL CHEMISTRY (2013)
Single-cell lysis for visual analysis by electron microscopy
Simon Kemmerling et al.
JOURNAL OF STRUCTURAL BIOLOGY (2013)
Structure of the TRPV1 ion channel determined by electron cryo-microscopy
Maofu Liao et al.
NATURE (2013)
Real-time single-molecule coimmunoprecipitation of weak protein-protein interactions
Hong-Won Lee et al.
NATURE PROTOCOLS (2013)
Linkers in the structural biology of protein-protein interactions
Vishnu Priyanka Reddy Chichili et al.
PROTEIN SCIENCE (2013)
Integrative Structural Biology
Andrew B. Ward et al.
SCIENCE (2013)
A promiscuous biotin ligase fusion protein identifies proximal and interacting proteins in mammalian cells
Kyle J. Roux et al.
JOURNAL OF CELL BIOLOGY (2012)
RELION: Implementation of a Bayesian approach to cryo-EM structure determination
Sjors H. W. Scheres
JOURNAL OF STRUCTURAL BIOLOGY (2012)
Protein dynamics viewed by hydrogen exchange
John J. Skinner et al.
PROTEIN SCIENCE (2012)
Data processing and analysis with the autoPROC toolbox
Clemens Vonrhein et al.
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2011)
Femtosecond X-ray protein nanocrystallography
Henry N. Chapman et al.
NATURE (2011)
High-throughput protein purification and quality assessment for crystallization
Youngchang Kim et al.
METHODS (2011)
Benchmarking and Analysis of Protein Docking Performance in Rosetta v3.2
Sidhartha Chaudhury et al.
PLOS ONE (2011)
Direct-coupling analysis of residue coevolution captures native contacts across many protein families
Faruck Morcos et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
Experimental phasing and radiation damage Introduction to phasing
Garry L. Taylor
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2010)
Designs and applications of fluorescent protein-based biosensors
Andreas Ibraheem et al.
CURRENT OPINION IN CHEMICAL BIOLOGY (2010)
xia2: an expert system for macromolecular crystallography data reduction
G. Winter
JOURNAL OF APPLIED CRYSTALLOGRAPHY (2010)
Structural characterization of proteins and complexes using small-angle X-ray solution scattering
Haydyn D. T. Mertens et al.
JOURNAL OF STRUCTURAL BIOLOGY (2010)
Inference of macromolecular assemblies from crystalline state
Evgeny Krissinel et al.
JOURNAL OF MOLECULAR BIOLOGY (2007)
The worldwide Protein Data Bank (wwPDB): ensuring a single, uniform archive of PDB data
Helen Berman et al.
NUCLEIC ACIDS RESEARCH (2007)
Imaging intracellular fluorescent proteins at nanometer resolution
Eric Betzig et al.
SCIENCE (2006)
Automated sample mounting and alignment system for biological crystallography at a synchrotron source
G Snell et al.
STRUCTURE (2004)
The PDB is a covering set of small protein structures
D Kihara et al.
JOURNAL OF MOLECULAR BIOLOGY (2003)
Small-angle scattering studies of biological macromolecules in solution
DI Svergun et al.
REPORTS ON PROGRESS IN PHYSICS (2003)
MODIP revisited: re-evaluation and refinement of an automated procedure for modeling of disulfide bonds in proteins
VS Dani et al.
PROTEIN ENGINEERING (2003)
Stabilization of short collagen-like triple helices by protein engineering
S Frank et al.
JOURNAL OF MOLECULAR BIOLOGY (2001)