3.8 Article

GeneCloudOmics: A Data Analytic Cloud Platform for High-Throughput Gene Expression Analysis

Related references

Note: Only part of the references are listed.
Article Biochemistry & Molecular Biology

DisProt: intrinsic protein disorder annotation in 2020

Andras Hatos et al.

NUCLEIC ACIDS RESEARCH (2020)

Article Biochemistry & Molecular Biology

The DisGeNET knowledge platform for disease genomics: 2019 update

Janet Pinero et al.

NUCLEIC ACIDS RESEARCH (2020)

Article Biotechnology & Applied Microbiology

Combining Machine Learning and Metabolomics to Identify Weight Gain Biomarkers

Flavia Luisa Dias-Audibert et al.

FRONTIERS IN BIOENGINEERING AND BIOTECHNOLOGY (2020)

Review Genetics & Heredity

High-Throughput Transcriptome Profiling in Drug and Biomarker Discovery

Xiaonan Yang et al.

FRONTIERS IN GENETICS (2020)

Article Biochemical Research Methods

(Differential) Co-Expression Analysis of Gene Expression: A Survey of Best Practices

Hussain Ahmed Chowdhury et al.

IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS (2020)

Review Biochemical Research Methods

Interpretation of differential gene expression results of RNA-seq data: review and integration

Adam McDermaid et al.

BRIEFINGS IN BIOINFORMATICS (2019)

Article Biochemistry & Molecular Biology

g:Profiler: a web server for functional enrichment analysis and conversions of gene lists (2019 update)

Uku Raudvere et al.

NUCLEIC ACIDS RESEARCH (2019)

Review Genetics & Heredity

RNA sequencing: the teenage years

Rory Stark et al.

NATURE REVIEWS GENETICS (2019)

Article Genetics & Heredity

ABioTrans: A Biostatistical Too for Transcriptomics Analysis

Yutong Zou et al.

FRONTIERS IN GENETICS (2019)

Article Biochemistry & Molecular Biology

UniProt: a worldwide hub of protein knowledge

Alex Bateman et al.

NUCLEIC ACIDS RESEARCH (2019)

Article Biochemistry & Molecular Biology

CORUM: the comprehensive resource of mammalian protein complexes2019

Madalina Giurgiu et al.

NUCLEIC ACIDS RESEARCH (2019)

Article Biochemistry & Molecular Biology

OMIM.org: leveraging knowledge across phenotype-gene relationships

Joanna S. Amberger et al.

NUCLEIC ACIDS RESEARCH (2019)

Article Biochemical Research Methods

Random forest based similarity learning for single cell RNA sequencing data

Maziyar Baran Pouyan et al.

BIOINFORMATICS (2018)

Article Biochemistry & Molecular Biology

GeneMANIA update 2018

Max Franz et al.

NUCLEIC ACIDS RESEARCH (2018)

Article Multidisciplinary Sciences

RLE plots: Visualizing unwanted variation in high dimensional data

Luke C. Gandolfo et al.

PLOS ONE (2018)

Article Biochemical Research Methods

Differential analysis of RNA-seq incorporating quantification uncertainty

Harold Pimentel et al.

NATURE METHODS (2017)

Editorial Material Biochemistry & Molecular Biology

All biology is computational biology

Florian Markowetz

PLOS BIOLOGY (2017)

Review Mathematical & Computational Biology

From protein-protein interactions to protein co-expression networks: a new perspective to evaluate large-scale proteomic data

Danila Vella et al.

EURASIP JOURNAL ON BIOINFORMATICS AND SYSTEMS BIOLOGY (2017)

Article Biochemical Research Methods

Cytoscape.js: a graph theory library for visualisation and analysis

Max Franz et al.

BIOINFORMATICS (2016)

Review Biochemical Research Methods

Systematically evaluating interfaces for RNA-seq analysis from a life scientist perspective

Alicia Poplawski et al.

BRIEFINGS IN BIOINFORMATICS (2016)

Article Biotechnology & Applied Microbiology

CANEapp: a user-friendly application for automated next generation transcriptomic data analysis

Dmitry Velmeshev et al.

BMC GENOMICS (2016)

Article Biochemical Research Methods

Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown

Mihaela Pertea et al.

NATURE PROTOCOLS (2016)

Editorial Material Biochemical Research Methods

Ten Simple Rules for Developing Public Biological Databases

Mohamed Helmy et al.

PLOS COMPUTATIONAL BIOLOGY (2016)

Article Genetics & Heredity

Tracking global gene expression responses in T cell differentiation

Oriane Simeoni et al.

Article Biochemistry & Molecular Biology

Data quality aware analysis of differential expression in RNA-seq with NOISeq R/Bioc package

Sonia Tarazona et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Biochemistry & Molecular Biology

Big Data: Astronomical or Genomical?

Zachary D. Stephens et al.

PLOS BIOLOGY (2015)

Article Biochemical Research Methods

RNASeqGUI: a GUI for analysing RNA-Seq data

Francesco Russo et al.

BIOINFORMATICS (2014)

Article Multidisciplinary Sciences

Reconstructing lineage hierarchies of the distal lung epithelium using single-cell RNA-seq

Barbara Treutlein et al.

NATURE (2014)

Article Biotechnology & Applied Microbiology

Normalization of RNA-seq data using factor analysis of control genes or samples

Davide Risso et al.

NATURE BIOTECHNOLOGY (2014)

Article Multidisciplinary Sciences

Transcriptome-wide Variability in Single Embryonic Development Cells

Vincent Piras et al.

SCIENTIFIC REPORTS (2014)

Article Medicine, Research & Experimental

Comparing Bioinformatic Gene Expression Profiling Methods: Microarray and RNA-Seq

Kirk J. Mantione et al.

MEDICAL SCIENCE MONITOR BASIC RESEARCH (2014)

Article Biotechnology & Applied Microbiology

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

Michael I. Love et al.

GENOME BIOLOGY (2014)

Editorial Material Biochemical Research Methods

Ten Simple Rules for Providing a Scientific Web Resource

Sebastian J. Schultheiss

PLOS COMPUTATIONAL BIOLOGY (2011)

Article Biochemical Research Methods

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

Mark D. Robinson et al.

BIOINFORMATICS (2010)

Article Biochemical Research Methods

Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments

James H. Bullard et al.

BMC BIOINFORMATICS (2010)

Article Multidisciplinary Sciences

Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles

A Subramanian et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)