Related references
Note: Only part of the references are listed.Epidemiological data analysis of viral quasispecies in the next-generation sequencing era
Sergey Knyazev et al.
BRIEFINGS IN BIOINFORMATICS (2021)
Inference of viral quasispecies with a paired de Bruijn graph
Borja Freire et al.
BIOINFORMATICS (2021)
Scalable long read self-correction and assembly polishing with multiple sequence alignment
Pierre Morisse et al.
SCIENTIFIC REPORTS (2021)
Novel SARS-CoV-2 variants: the pandemics within the pandemic
Erik Boehm et al.
CLINICAL MICROBIOLOGY AND INFECTION (2021)
Accurate assembly of minority viral haplotypes from next-generation sequencing through efficient noise reduction
Sergey Knyazev et al.
NUCLEIC ACIDS RESEARCH (2021)
Computational methods for chromosome-scale haplotype reconstruction
Shilpa Garg
GENOME BIOLOGY (2021)
Accurate assembly of minority viral haplotypes from next-generation sequencing through efficient noise reduction
Sergey Knyazev et al.
NUCLEIC ACIDS RESEARCH (2021)
Fast and accurate long-read assembly with wtdbg2
Jue Ruan et al.
NATURE METHODS (2020)
Characterization of Potato Virus Y Isolates and Assessment of Nanopore Sequencing to Detect and Genotype Potato Viruses
Michele Della Bartola et al.
VIRUSES-BASEL (2020)
Nanopore sequencing and the Shasta toolkit enable efficient de novo assembly of eleven human genomes
Kishwar Shafin et al.
NATURE BIOTECHNOLOGY (2020)
Long-read human genome sequencing and its applications
Glennis A. Logsdon et al.
NATURE REVIEWS GENETICS (2020)
metaFlye: scalable long-read metagenome assembly using repeat graphs
Mikhail Kolmogorov et al.
NATURE METHODS (2020)
Assembly of long, error-prone reads using repeat graphs
Mikhail Kolmogorov et al.
NATURE BIOTECHNOLOGY (2019)
Full-length de novo viral quasispecies assembly through variation graph construction
Jasmijn A. Baaijens et al.
BIOINFORMATICS (2019)
Long-read based de novo assembly of low-complexity metagenome samples results in finished genomes and reveals insights into strain diversity and an active phage system
Vincent Somerville et al.
BMC MICROBIOLOGY (2019)
MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies
Dongwan D. Kang et al.
PEERJ (2019)
Versatile genome assembly evaluation with QUAST-LG
Alla Mikheenko et al.
BIOINFORMATICS (2018)
Minimap2: pairwise alignment for nucleotide sequences
Heng Li
BIOINFORMATICS (2018)
High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries
Chirag Jain et al.
NATURE COMMUNICATIONS (2018)
De novo assembly of viral quasispecies using overlap graphs
Jasmijn A. Baaijens et al.
GENOME RESEARCH (2017)
Fast and accurate de novo genome assembly from long uncorrected reads
Robert Vaser et al.
GENOME RESEARCH (2017)
Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation
Sergey Koren et al.
GENOME RESEARCH (2017)
NanoSim: nanopore sequence read simulator based on statistical characterization
Chen Yang et al.
GIGASCIENCE (2017)
Minimap and miniasm: fast mapping and de novo assembly for noisy long sequences
Heng Li
BIOINFORMATICS (2016)
Phased diploid genome assembly with single-molecule real-time sequencing
Chen-Shan Chin et al.
NATURE METHODS (2016)
HIV Haplotype Inference Using a Propagating Dirichlet Process Mixture Model
Sandhya Prabhakaran et al.
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS (2014)
Full-length haplotype reconstruction to infer the structure of heterogeneous virus populations
Francesca Di Giallonardo et al.
NUCLEIC ACIDS RESEARCH (2014)
Viral Quasispecies Assembly via Maximal Clique Enumeration
Armin Toepfer et al.
PLOS COMPUTATIONAL BIOLOGY (2014)
PBSIM: PacBio reads simulator-toward accurate genome assembly
Yukiteru Ono et al.
BIOINFORMATICS (2013)
A Culture-Independent Sequence-Based Metagenomics Approach to the Investigation of an Outbreak of Shiga-Toxigenic Escherichia coli O104:H4
Nicholas J. Loman et al.
JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION (2013)
Viral Quasispecies Evolution
Esteban Domingo et al.
MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS (2012)
ShoRAH: estimating the genetic diversity of a mixed sample from next-generation sequencing data
Osvaldo Zagordi et al.
BMC BIOINFORMATICS (2011)
Computational methods for the design of effective therapies against drug resistant HIV strains
N Beerenwinkel et al.
BIOINFORMATICS (2005)
Increase in viral gastroenteritis outbreaks in Europe and epidemic spread of new norovirus variant
B Lopman et al.
LANCET (2004)
Multiple sequence alignment using partial order graphs
C Lee et al.
BIOINFORMATICS (2002)
Share Paper
