Related references
Note: Only part of the references are listed.Single-cell analysis of cis-regulatory elements
Alexandre P. Marand et al.
CURRENT OPINION IN PLANT BIOLOGY (2022)
WIDENING THE BOTTLENECK OF PHOSPHOPROTEOMICS: EVOLVING STRATEGIES FOR PHOSPHOPEPTIDE ENRICHMENT
Teck Yew Low et al.
MASS SPECTROMETRY REVIEWS (2021)
Fully Automated Sample Processing and Analysis Workflow for Low-Input Proteome Profiling
Yiran Liang et al.
ANALYTICAL CHEMISTRY (2021)
Single-cell RNA sequencing of developing maize ears facilitates functional analysis and trait candidate gene discovery
Xiaosa Xu et al.
DEVELOPMENTAL CELL (2021)
Single-nucleus RNA and ATAC sequencing reveals the impact of chromatin accessibility on gene expression in Arabidopsis roots at the single-cell level
Andrew Farmer et al.
MOLECULAR PLANT (2021)
Transcriptional landscape of rice roots at the single-cell resolution
Qing Liu et al.
MOLECULAR PLANT (2021)
Defining the carrier proteome limit for single-cell proteomics
Tommy K. Cheung et al.
NATURE METHODS (2021)
Spatially Resolved Mass Spectrometry at the Single Cell: Recent Innovations in Proteomics and Metabolomics
Michael J. Taylor et al.
JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY (2021)
Differential biosynthesis and cellular permeability explain longitudinal gibberellin gradients in growing roots
Annalisa Rizza et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2021)
A cis-regulatory atlas in maize at single-cell resolution
Alexandre P. Marand et al.
CELL (2021)
Single-cell resolution of lineage trajectories in the Arabidopsis stomatal lineage and developing leaf
Camila B. Lopez-Anido et al.
DEVELOPMENTAL CELL (2021)
TMTpro-18plex: The Expanded and Complete Set of TMTpro Reagents for Sample Multiplexing
Jiaming Li et al.
JOURNAL OF PROTEOME RESEARCH (2021)
Towards resolving proteomes in single cells
Arunima Singh
NATURE METHODS (2021)
Quantitative single-cell proteomics as a tool to characterize cellular hierarchies
Erwin M. Schoof et al.
NATURE COMMUNICATIONS (2021)
Space: the final frontier - achieving single-cell, spatially resolved transcriptomics in plants
Sai Guna Ranjan Gurazada et al.
EMERGING TOPICS IN LIFE SCIENCES (2021)
Optimizing Accuracy and Depth of Protein Quantification in Experiments Using Isobaric Carriers
Harrison Specht et al.
JOURNAL OF PROTEOME RESEARCH (2021)
Single-cell proteomic and transcriptomic analysis of macrophage heterogeneity using SCoPE2
Harrison Specht et al.
GENOME BIOLOGY (2021)
Ultrasensitive single-cell proteomics workflow identifies >1000 protein groups per mammalian cell
Yongzheng Cong et al.
CHEMICAL SCIENCE (2021)
DIA-NN: neural networks and interference correction enable deep proteome coverage in high throughput
Vadim Demichev et al.
NATURE METHODS (2020)
An Improved Boosting to Amplify Signal with Isobaric Labeling (iBASIL) Strategy for Precise Quantitative Single-cell Proteomics
Chia-Feng Tsai et al.
MOLECULAR & CELLULAR PROTEOMICS (2020)
Structural Aspects of Plant Hormone Signal Perception and Regulation by Ubiquitin Ligases(1)([OPEN])
Lior Tal et al.
PLANT PHYSIOLOGY (2020)
Deep Profiling of Cellular Heterogeneity by Emerging Single-Cell Proteomic Technologies
Liwei Yang et al.
PROTEOMICS (2020)
In silico spectral libraries by deep learning facilitate data-independent acquisition proteomics
Yi Yang et al.
NATURE COMMUNICATIONS (2020)
Embracing the dropouts in single-cell RNA-seq analysis
Peng Qiu
NATURE COMMUNICATIONS (2020)
Data-Independent Acquisition Mass Spectrometry-Based Proteomics and Software Tools: A Glimpse in 2020
Fangfei Zhang et al.
PROTEOMICS (2020)
Acquiring and Analyzing Data Independent Acquisition Proteomics Experiments without Spectrum Libraries
Lindsay K. Pino et al.
MOLECULAR & CELLULAR PROTEOMICS (2020)
Mass-spectrometry-based draft of the Arabidopsis proteome
Julia Mergner et al.
NATURE (2020)
Simple Method to Quantify Protein Abundances from 1000 Cells
Burcu Vitrinel et al.
ACS OMEGA (2020)
Improved Sensitivity of Ultralow Flow LC-MS-Based Proteomic Profiling of Limited Samples Using Monolithic Capillary Columns and FAIMS Technology
Michal Gregus et al.
ANALYTICAL CHEMISTRY (2020)
Protein complex stoichiometry and expression dynamics of transcription factors modulate stem cell division
Natalie M. Clark et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)
Single-cell Proteomics: Progress and Prospects
Ryan T. Kelly
MOLECULAR & CELLULAR PROTEOMICS (2020)
diaPASEF: parallel accumulation-serial fragmentation combined with data-independent acquisition
Florian Meier et al.
NATURE METHODS (2020)
Plant stem-cell organization and differentiation at single-cell resolution
James W. Satterlee et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)
Single-cell protein analysis by mass spectrometry
Nikolai Slavov
CURRENT OPINION IN CHEMICAL BIOLOGY (2020)
Integrated multi-omics framework of the plant response to jasmonic acid
Mark Zander et al.
NATURE PLANTS (2020)
Spatiotemporal Developmental Trajectories in the Arabidopsis Root Revealed Using High-Throughput Single-Cell RNA Sequencing
Tom Denyer et al.
DEVELOPMENTAL CELL (2019)
DO-MS: Data-Driven Optimization of Mass Spectrometry Methods
R. Gray Huffman et al.
JOURNAL OF PROTEOME RESEARCH (2019)
Exploiting Interdata Relationships in Next-generation Proteomics Analysis
Burcu Vitrinel et al.
MOLECULAR & CELLULAR PROTEOMICS (2019)
A Single-Cell RNA Sequencing Profiles the Developmental Landscape of Arabidopsis Root
Tian-Qi Zhang et al.
MOLECULAR PLANT (2019)
Towards Building a Plant Cell Atlas
Seung Y. Rhee et al.
TRENDS IN PLANT SCIENCE (2019)
Single-Cell RNA-Seq Technologies and Related Computational Data Analysis
Geng Chen et al.
FRONTIERS IN GENETICS (2019)
Single Cell Proteomics by Data-Independent Acquisition To Study Embryonic Asymmetry in Xenopus laevis
Anumita Saha-Shah et al.
ANALYTICAL CHEMISTRY (2019)
Current best practices in single-cell RNA-seq analysis: a tutorial
Malte D. Luecken et al.
MOLECULAR SYSTEMS BIOLOGY (2019)
DART-ID increases single-cell proteome coverage
Albert Tian Chen et al.
PLOS COMPUTATIONAL BIOLOGY (2019)
High-Throughput Single Cell Proteomics Enabled by Multiplex Isobaric Labeling in a Nanodroplet Sample Preparation Platform
Maowei Dou et al.
ANALYTICAL CHEMISTRY (2019)
Improved Sensitivity in Low-Input Proteomics Using Micropillar Array-Based Chromatography
Johannes Stadlmann et al.
ANALYTICAL CHEMISTRY (2019)
A systematic evaluation of single cell RNA-seq analysis pipelines
Beate Vieth et al.
NATURE COMMUNICATIONS (2019)
Characterization of Proteome Variation During Modern Maize Breeding
Lu-Guang Jiang et al.
MOLECULAR & CELLULAR PROTEOMICS (2019)
Fungal-induced protein hyperacetylation in maize identified by acetylome profiling
Justin W. Walley et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)
Nanoliter-Scale Oil-Air-Droplet Chip-Based Single Cell Proteomic Analysis
Zi-Yi Li et al.
ANALYTICAL CHEMISTRY (2018)
Integrated Analysis of Protein Abundance, Transcript Level, and Tissue Diversity To Reveal Developmental Regulation of Maize
Haitao Jia et al.
JOURNAL OF PROTEOME RESEARCH (2018)
Photoperiodic control of the Arabidopsis proteome reveals a translational coincidence mechanism
Daniel D. Seaton et al.
MOLECULAR SYSTEMS BIOLOGY (2018)
Nanodroplet processing platform for deep and quantitative proteome profiling of 10-100 mammalian cells
Ying Zhu et al.
NATURE COMMUNICATIONS (2018)
iDREM: Interactive visualization of dynamic regulatory networks
Jun Ding et al.
PLOS COMPUTATIONAL BIOLOGY (2018)
Exploring the single-cell RNA-seq analysis landscape with the scRNA-tools database
Luke Zappia et al.
PLOS COMPUTATIONAL BIOLOGY (2018)
Comparison of Vacuum MALDI and AP-MALDI Platforms for the Mass Spectrometry Imaging of Metabolites Involved in Salt Stress in Medicago truncatula
Caitlin Keller et al.
FRONTIERS IN PLANT SCIENCE (2018)
Development of a NanoLC-MS/MS System Using a Nonporous Reverse Phase Column for Ultrasensitive Proteome Analysis
Yusuke Kawashima et al.
ANALYTICAL CHEMISTRY (2018)
SCoPE-MS: mass spectrometry of single mammalian cells quantifies proteome heterogeneity during cell differentiation
Bogdan Budnik et al.
GENOME BIOLOGY (2018)
SCENIC: single-cell regulatory network inference and clustering
Sara Aibar et al.
NATURE METHODS (2017)
Statistical control of peptide and protein error rates in large-scale targeted data-independent acquisition analyses
George Rosenberger et al.
NATURE METHODS (2017)
Plant Systems Biology at the Single-Cell Level
Marc Libault et al.
TRENDS IN PLANT SCIENCE (2017)
Ultra-High Mass Resolution MALDI Imaging Mass Spectrometry of Proteins and Metabolites in a Mouse Model of Glioblastoma
M. Dilillo et al.
SCIENTIFIC REPORTS (2017)
SCODE: an efficient regulatory network inference algorithm from single-cell RNA-Seq during differentiation
Hirotaka Matsumoto et al.
BIOINFORMATICS (2017)
Integration of omic networks in a developmental atlas of maize
Justin W. Walley et al.
SCIENCE (2016)
Tracking transcription factor mobility and interaction in Arabidopsis roots with fluorescence correlation spectroscopy
Natalie M. Clark et al.
ELIFE (2016)
Dynamic Protein Acetylation in Plant-Pathogen Interactions
Gaoyuan Song et al.
FRONTIERS IN PLANT SCIENCE (2016)
Minimal, encapsulated proteomic-sample processing applied to copy-number estimation in eukaryotic cells
Nils A. Kulak et al.
NATURE METHODS (2014)
Correlation of mRNA and protein abundance in the developing maize leaf
Lalit Ponnala et al.
PLANT JOURNAL (2014)
Experimental data and computational modeling link auxin gradient and development in the Arabidopsis root
Natalie M. Clark et al.
FRONTIERS IN PLANT SCIENCE (2014)
Accounting for technical noise in single-cell RNA-seq experiments
Philip Brennecke et al.
NATURE METHODS (2013)
Single-cell-type Proteomics: Toward a Holistic Understanding of Plant Function
Shaojun Dai et al.
MOLECULAR & CELLULAR PROTEOMICS (2012)
The protein expression landscape of the Arabidopsis root
Jalean J. Petricka et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
A plausible mechanism for auxin patterning along the developing root
Victoria V. Mironova et al.
BMC SYSTEMS BIOLOGY (2010)
Comparing signaling mechanisms engaged in pattern-triggered and effector-triggered immunity
Kenichi Tsuda et al.
CURRENT OPINION IN PLANT BIOLOGY (2010)
Plant immunity: towards an integrated view of plant-pathogen interactions
Peter N. Dodds et al.
NATURE REVIEWS GENETICS (2010)
Network Modeling Reveals Prevalent Negative Regulatory Relationships between Signaling Sectors in Arabidopsis Immune Signaling
Masanao Sato et al.
PLOS PATHOGENS (2010)
Gene expression map of the Arabidopsis shoot apical meristem stem cell niche
Ram Kishor Yadav et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
A mutual support mechanism through intercellular movement of CAPRICE and GLABRA3 can pattern the Arabidopsis root epidermis
Natasha Saint Savage et al.
PLOS BIOLOGY (2008)
Auxin transport is sufficient to generate a maximum and gradient guiding root growth
Veronica A. Grieneisen et al.
NATURE (2007)
Arabidopsis mesophyll protoplasts: a versatile cell system for transient gene expression analysis
Sang-Dong Yoo et al.
NATURE PROTOCOLS (2007)
Whole-genome analysis of the SHORT-ROOT developmental pathway in Arabidopsis
Mitchell P. Levesque et al.
PLOS BIOLOGY (2006)
Cell-to-cell movement of the CAPRICE protein in Arabidopsis root epidermal cell differentiation
T Kurata et al.
DEVELOPMENT (2005)
Cell type-specific expression profiting in plants via cell sorting of protoplasts from fluorescent reporter lines
K Birnbaum et al.
NATURE METHODS (2005)
Mechanisms regulating SHORT-ROOT intercellular movement
KL Gallagher et al.
CURRENT BIOLOGY (2004)