4.7 Article

Ab-Initio Membrane Protein Amphipathic Helix Structure Prediction Using Deep Neural Networks

Related references

Note: Only part of the references are listed.
Letter Computer Science, Information Systems

Identifying RNA-binding proteins using multi-label deep learning

Xiaoyong Pan et al.

SCIENCE CHINA-INFORMATION SCIENCES (2019)

Article Computer Science, Artificial Intelligence

DeepLab: Semantic Image Segmentation with Deep Convolutional Nets, Atrous Convolution, and Fully Connected CRFs

Liang-Chieh Chen et al.

IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE (2018)

Article Multidisciplinary Sciences

Structural basis of the molecular ruler mechanism of a bacterial glycosyltransferase

Ana S. Ramirez et al.

NATURE COMMUNICATIONS (2018)

Article Multidisciplinary Sciences

A giant amphipathic helix from a perilipin that is adapted for coating lipid droplets

Alenka Copic et al.

NATURE COMMUNICATIONS (2018)

Article Biochemistry & Molecular Biology

Uniclust databases of clustered and deeply annotated protein sequences and alignments

Milot Mirdita et al.

NUCLEIC ACIDS RESEARCH (2017)

Article Computer Science, Artificial Intelligence

Explaining nonlinear classification decisions with deep Taylor decomposition

Gregoire Montavon et al.

PATTERN RECOGNITION (2017)

Article Biochemical Research Methods

Accurate De Novo Prediction of Protein Contact Map by Ultra-Deep Learning Model

Sheng Wang et al.

PLOS COMPUTATIONAL BIOLOGY (2017)

Article Computer Science, Hardware & Architecture

ImageNet Classification with Deep Convolutional Neural Networks

Alex Krizhevsky et al.

COMMUNICATIONS OF THE ACM (2017)

Article Biochemistry & Molecular Biology

TMSEG: Novel prediction of transmembrane helices

Michael Bernhofer et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2016)

Article Biochemistry & Molecular Biology

Evaluation of transmembrane helix predictions in 2014

Jonas Reeb et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2015)

Article Biochemical Research Methods

Mass spectrometry of intact membrane protein complexes

Arthur Laganowsky et al.

NATURE PROTOCOLS (2013)

Article Biochemical Research Methods

HHblits: lightning-fast iterative protein sequence searching by HMM-HMM alignment

Michael Remmert et al.

NATURE METHODS (2012)

Article Multidisciplinary Sciences

Accurate de novo structure prediction of large transmembrane protein domains using fragment-assembly and correlated mutation analysis

Timothy Nugent et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Article Biochemistry & Molecular Biology

Genome-wide analysis of integral membrane proteins from eubacterial, archaean, and eukaryotic organisms

Erik Wallin et al.

PROTEIN SCIENCE (2010)

Article Biochemistry & Molecular Biology

TOPCONS: consensus prediction of membrane protein topology

Andreas Bernsel et al.

NUCLEIC ACIDS RESEARCH (2009)

Article Multidisciplinary Sciences

MemBrain: Improving the Accuracy of Predicting Transmembrane Helices

Hongbin Shen et al.

PLOS ONE (2008)

Article Biochemical Research Methods

Transmembrane Topology and Signal Peptide Prediction Using Dynamic Bayesian Networks

Sheila M. Reynolds et al.

PLOS COMPUTATIONAL BIOLOGY (2008)

Article Biochemistry & Molecular Biology

A general amphipathic α-helical motif for sensing membrane curvature

Guillaume Drin et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2007)

Article Biotechnology & Applied Microbiology

Opinion - How many drug targets are there?

John P. Overington et al.

NATURE REVIEWS DRUG DISCOVERY (2006)

Article Biochemical Research Methods

Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

Weizhong Li et al.

BIOINFORMATICS (2006)

Article Biochemical Research Methods

Prediction of amphipathic in-plane membrane anchors in monotopic proteins using a SVM classifier

Nicolas Sapay et al.

BMC BIOINFORMATICS (2006)

Article Biochemistry & Molecular Biology

Multipass membrane protein structure prediction using Rosetta

V Yarov-Yarovoy et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2006)

Article Biochemical Research Methods

OPM: Orientations of proteins in membranes database

MA Lomize et al.

BIOINFORMATICS (2006)

Article Biochemistry & Molecular Biology

A study of the membrane-water interface region of membrane proteins

E Granseth et al.

JOURNAL OF MOLECULAR BIOLOGY (2005)

Article Biophysics

Structural themes in ion channels

DA Doyle

EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS (2004)

Article Biochemistry & Molecular Biology

A combined transmembrane topology and signal peptide prediction method

L Käll et al.

JOURNAL OF MOLECULAR BIOLOGY (2004)

Article Biochemical Research Methods

PISCES: a protein sequence culling server

GL Wang et al.

BIOINFORMATICS (2003)

Article Biochemistry & Molecular Biology

The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003

B Boeckmann et al.

NUCLEIC ACIDS RESEARCH (2003)

Article Biochemistry & Molecular Biology

Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes

A Krogh et al.

JOURNAL OF MOLECULAR BIOLOGY (2001)