Related references
Note: Only part of the references are listed.Heterogeneous graph attention network based on meta-paths for lncRNA-disease association prediction
Xiaosa Zhao et al.
BRIEFINGS IN BIOINFORMATICS (2022)
Cross-talk between GLI transcription factors and FOXC1 promotes T-cell acute lymphoblastic leukemia dissemination
Valeria Tosello et al.
LEUKEMIA (2021)
Definition of a small core transcriptional circuit regulated by AML1-ETO
Kristy R. Stengel et al.
MOLECULAR CELL (2021)
scPower accelerates and optimizes the design of multi-sample single cell transcriptomic studies
Katharina T. Schmid et al.
NATURE COMMUNICATIONS (2021)
Effects of Sample Size on Plant Single-Cell RNA Profiling
Hongyu Chen et al.
CURRENT ISSUES IN MOLECULAR BIOLOGY (2021)
Chromatin accessibility profiling methods
Liesbeth Minnoye et al.
NATURE REVIEWS METHODS PRIMERS (2021)
Master transcription factors form interconnected circuitry and orchestrate transcriptional networks in oesophageal adenocarcinoma
Li Chen et al.
GUT (2020)
Benchmarking algorithms for gene regulatory network inference from single-cell transcriptomic data
Aditya Pratapa et al.
NATURE METHODS (2020)
EZH2-Deficient T-cell Acute Lymphoblastic Leukemia Is Sensitized to CHK1 Inhibition through Enhanced Replication Stress
Theresa E. Leon et al.
CANCER DISCOVERY (2020)
Single-cell chromatin accessibility maps reveal regulatory programs driving early mouse organogenesis
Blanca Pijuan-Sala et al.
NATURE CELL BIOLOGY (2020)
Network-principled deep generative models for designing drug combinations as graph sets
Mostafa Karimi et al.
BIOINFORMATICS (2020)
Graph-based prediction of Protein-protein interactions with attributed signed graph embedding
Fang Yang et al.
BMC BIOINFORMATICS (2020)
Gene regulatory programmes of tissue regeneration
Joseph A. Goldman et al.
NATURE REVIEWS GENETICS (2020)
EWS-FLI1 regulates and cooperates with core regulatory circuitry in Ewing sarcoma
Xianping Shi et al.
NUCLEIC ACIDS RESEARCH (2020)
Graph embedding ensemble methods based on the heterogeneous network for lncRNA-miRNA interaction prediction
Chengshuai Zhao et al.
BMC GENOMICS (2020)
Glioblastoma epigenome profiling identifies SOX10 as a master regulator of molecular tumour subtype
Yonghe Wu et al.
NATURE COMMUNICATIONS (2020)
Inductive inference of gene regulatory network using supervised and semi-supervised graph neural networks
Juexin Wang et al.
COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL (2020)
Integration of single-cell multi-omics for gene regulatory network inference
Xinlin Hu et al.
COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL (2020)
A human cell atlas of fetal chromatin accessibility
Silvia Domcke et al.
SCIENCE (2020)
Characterisation of CD4+T-cell subtypes using single cell RNA sequencing and the impact of cell number and sequencing depth
James Ding et al.
SCIENTIFIC REPORTS (2020)
Integrative analyses of single-cell transcriptome and regulome using MAESTRO
Chenfei Wang et al.
GENOME BIOLOGY (2020)
Lisa: inferring transcriptional regulators through integrative modeling of public chromatin accessibility and ChIP-seq data
Qian Qin et al.
GENOME BIOLOGY (2020)
Leveraging chromatin accessibility for transcriptional regulatory network inference in T Helper 17 Cells
Emily R. Miraldi et al.
GENOME RESEARCH (2019)
Nonclassical Monocytes in Health and Disease
Prakash Babu Narasimhan et al.
Annual Review of Immunology (2019)
Rational Targeting of Cooperating Layers of the Epigenome Yields Enhanced Therapeutic Efficacy against AML
Cihangir Duy et al.
CANCER DISCOVERY (2019)
Comprehensive Integration of Single-Cell Data
Tim Stuart et al.
CELL (2019)
A KLF4-DYRK2-mediated pathway regulating self-renewal in CML stem cells
Chun Shik Park et al.
BLOOD (2019)
Building gene regulatory networks from scATAC-seq and scRNA-seq using Linked Self Organizing Maps
Camden Jansen et al.
PLOS COMPUTATIONAL BIOLOGY (2019)
GRNBoost2 and Arboreto: efficient and scalable inference of gene regulatory networks
Thomas Moerman et al.
BIOINFORMATICS (2019)
Single-cell multiomic analysis identifies regulatory programs in mixed-phenotype acute leukemia
Jeffrey M. Granja et al.
NATURE BIOTECHNOLOGY (2019)
Single-nucleus chromatin accessibility reveals intratumoral epigenetic heterogeneity in IDH1 mutant gliomas
Ruslan Al-Ali et al.
ACTA NEUROPATHOLOGICA COMMUNICATIONS (2019)
A Knowledge Selective Adversarial Network for Link Prediction in Knowledge Graph
Kairong Hu et al.
NATURAL LANGUAGE PROCESSING AND CHINESE COMPUTING (NLPCC 2019), PT I (2019)
Integrative single-cell analysis of transcriptional and epigenetic states in the human adult brain
Blue B. Lake et al.
NATURE BIOTECHNOLOGY (2018)
Transcription regulation by the Mediator complex
Julie Soutourina
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2018)
Mapping gene regulatory networks from single-cell omics data
Mark W. E. J. Fiers et al.
BRIEFINGS IN FUNCTIONAL GENOMICS (2018)
An atlas of chromatin accessibility in the adult human brain
John F. Fullard et al.
GENOME RESEARCH (2018)
Derepression of the Iroquois Homeodomain Transcription Factor Gene IRX3 Confers Differentiation Block in Acute Leukemia
Tim D. D. Somerville et al.
CELL REPORTS (2018)
The genetic basis and cell of origin of mixed phenotype acute leukaemia
Thomas B. Alexander et al.
NATURE (2018)
The cis-regulatory dynamics of embryonic development at single-cell resolution
Darren A. Cusanovich et al.
NATURE (2018)
A Bayesian framework for the inference of gene regulatory networks from time and pseudo-time series data
M. Sanchez-Castillo et al.
BIOINFORMATICS (2018)
SINCERITIES: inferring gene regulatory networks from time-stamped single cell transcriptional expression profiles
Nan Papili Gao et al.
BIOINFORMATICS (2018)
A Survey of Link Prediction in Complex Networks
Victor Martinez et al.
ACM COMPUTING SURVEYS (2017)
SCENIC: single-cell regulatory network inference and clustering
Sara Aibar et al.
NATURE METHODS (2017)
Reconstructing blood stem cell regulatory network models from single-cell molecular profiles
Fiona K. Hamey et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)
Gene Regulatory Network Inference from Single-Cell Data Using Multivariate Information Measures
Thalia E. Chan et al.
CELL SYSTEMS (2017)
Prostaglandin E1 and Its Analog Misoprostol Inhibit Human CML Stem Cell Self-Renewal via EP4 Receptor Activation and Repression of AP-1
Fengyin Li et al.
CELL STEM CELL (2017)
SCOUP: a probabilistic model based on the Ornstein-Uhlenbeck process to analyze single-cell expression data during differentiation
Hirotaka Matsumoto et al.
BMC BIOINFORMATICS (2016)
The origin and evolution of cell types
Detlev Arendt et al.
NATURE REVIEWS GENETICS (2016)
Chromatin accessibility maps of chronic lymphocytic leukaemia identify subtype-specific epigenome signatures and transcription regulatory networks
Andre F. Rendeiro et al.
NATURE COMMUNICATIONS (2016)
Integration of ATAC-seq and RNA-seq identifies human alpha cell and beta cell signature genes
Amanda M. Ackermann et al.
MOLECULAR METABOLISM (2016)
Exploiting single-cell expression to characterize co-expression replicability
Megan Crow et al.
GENOME BIOLOGY (2016)
Characterization of the genome-wide TLX1 binding profile in T-cell acute lymphoblastic leukemia
K. Durinck et al.
LEUKEMIA (2015)
ChIP-Array 2: integrating multiple omics data to construct gene regulatory networks
Panwen Wang et al.
NUCLEIC ACIDS RESEARCH (2015)
Inferring gene regulatory networks by integrating ChIP-seq/chip and transcriptome data via LASSO-type regularization methods
Jing Qin et al.
METHODS (2014)
A novel link prediction algorithm for reconstructing protein-protein interaction networks by topological similarity
Chengwei Lei et al.
BIOINFORMATICS (2013)
Circuitry and Dynamics of Human Transcription Factor Regulatory Networks
Shane Neph et al.
CELL (2012)
C/EBRγ deregulation results in differentiation arrest in acute myeloid leukemia
Meritxell Alberich-Jorda et al.
JOURNAL OF CLINICAL INVESTIGATION (2012)
Epigenetic polymorphism and the stochastic formation of differentially methylated regions in normal and cancerous tissues
Gilad Landan et al.
NATURE GENETICS (2012)
Gaussian interaction profile kernels for predicting drug-target interaction
Twan van Laarhoven et al.
BIOINFORMATICS (2011)
Activation of Paired-homeobox gene PITX1 by del(5)(q31) in T-cell acute lymphoblastic leukemia
Stefan Nagel et al.
LEUKEMIA & LYMPHOMA (2011)
Link prediction in complex networks: A survey
Linyuan Lue et al.
PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS (2011)
Inferring Regulatory Networks from Expression Data Using Tree-Based Methods
Van Anh Huynh-Thu et al.
PLOS ONE (2010)
The transcription factors T-bet and GATA-3 control alternative pathways of T-cell differentiation through a shared set of target genes
Richard G. Jenner et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Transcriptome-wide noise controls lineage choice in mammalian progenitor cells
Hannah H. Chang et al.
NATURE (2008)
Large-scale mapping and validation of Escherichia coli transcriptional regulation from a compendium of expression profiles
Jeremiah J. Faith et al.
PLOS BIOLOGY (2007)
Share Paper
