4.5 Review

Fast and Precise: How to Measure Meiotic Crossovers in Arabidopsis

Related references

Note: Only part of the references are listed.
Article Plant Sciences

Advances in enzyme-mediated proximity labeling and its potential for plant research

Andrea Mair et al.

Summary: Innovation in new enzymes and methods has made proximity labeling a valuable tool for studying protein interactions and subcellular proteomes in plants. This review provides an overview of currently available proximity labeling enzymes and their applications in mammalian cell culture and plants, discussing the challenges and limitations of the method and highlighting potential future directions.

PLANT PHYSIOLOGY (2022)

Review Biochemistry & Molecular Biology

Genome engineering for crop improvement and future agriculture

Caixia Gao

Summary: Genome editing has the potential to revolutionize plant breeding and address the challenge of feeding a growing population in the face of climate change. Newly developed techniques and strategies offer significant opportunities for plant improvement and crop production, but challenges must be overcome to realize the full potential of this technology.
Review Biotechnology & Applied Microbiology

Nanopore sequencing technology, bioinformatics and applications

Yunhao Wang et al.

Summary: Advancements in nanopore technologies for sequencing long DNA and RNA molecules have greatly improved accuracy, read length, and throughput. The field of nanopore sequencing continues to offer opportunities for enhancing data quality and analytical approaches through the development of new technologies tailored to specific applications.

NATURE BIOTECHNOLOGY (2021)

Article Multidisciplinary Sciences

The genetic and epigenetic landscape of the Arabidopsis centromeres

Matthew Naish et al.

Summary: The study used long-read sequencing to assemble the Arabidopsis genome and resolve all five centromeres. It found that centromeres consist of megabase-scale tandemly repeated satellite arrays and are invaded by retrotransposons. The centromeres are evolving through cycles of satellite homogenization and retrotransposon-driven diversification.

SCIENCE (2021)

Article Plant Sciences

Meiocyte Isolation by INTACT and Meiotic Transcriptome Analysis in Arabidopsis

Lucia Barra et al.

Summary: The INTACT method was used to isolate cell-type-specific nuclei, capturing meiotic nuclei in Arabidopsis and generating a meiotic transcriptome. Analysis revealed that DNA demethylation is particularly relevant to meiosis onset. By comparing transcriptomes and conducting gene ontology enrichment analysis, a core set of over 1,500 genes related to meiosis was identified.

FRONTIERS IN PLANT SCIENCE (2021)

Article Multidisciplinary Sciences

The synaptonemal complex imposes crossover interference and heterochiasmy in Arabidopsis

Laia Capilla-Perez et al.

Summary: The spatial organization of transverse filaments is essential for CO formation during meiosis, with the absence of ZYP1 leading to an unexpected increase in CO formation. The tripartite synaptonemal complex plays a key role in regulating the number and distribution of COs, affecting CO interference and heterochiasmy.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2021)

Article Multidisciplinary Sciences

ZYP1 is required for obligate cross-over formation and cross-over interference in Arabidopsis

Martin G. France et al.

Summary: The study on the function of the synaptonemal complex in Arabidopsis indicates that it limits the formation of Class I crossover interference and disrupts the progressive alignment of chromosome axes in plants.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2021)

Review Plant Sciences

From Microscopy to Nanoscopy: Defining an Arabidopsis thaliana Meiotic Atlas at the Nanometer Scale

Jason Sims et al.

Summary: Visualization of meiotic chromosomes and proteins has become crucial for studying meiosis, and recent advances in super-resolution technologies have enabled observation of cells and nuclei at nanometer scale, allowing researchers to observe complex meiotic molecular processes in unprecedented detail.

FRONTIERS IN PLANT SCIENCE (2021)

Review Genetics & Heredity

Architecture and Dynamics of Meiotic Chromosomes

Sarah N. Ur et al.

Summary: Meiotic cell division is a specialized process preparing for sexual reproduction, involving homologous chromosomes identifying each other and forming physical links through DNA recombination. The SMC family cohesin complexes and meiotic chromosome axis play crucial roles in organizing chromosomes and promoting recombination. The synaptonemal complex (SC) ensures high fidelity in meiotic recombination by assembling between homologs and providing feedback.

ANNUAL REVIEW OF GENETICS, VOL 55 (2021)

Article Multidisciplinary Sciences

Natural variation identifies SNI1, the SMC5/6 component, as a modifier of meiotic crossover

Longfei Zhu et al.

Summary: This study reveals the importance of the SMC5/6 complex in ensuring the proper progress of meiotic recombination in plants, showing the impact of SNI1 mutations and interactions with other genes on crossover distribution.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2021)

Article Multidisciplinary Sciences

Diffusion-mediated HEI10 coarsening can explain meiotic crossover positioning in Arabidopsis

Chris Morgan et al.

Summary: Through quantitative super-resolution cytogenetics and mathematical modeling, this study investigated crossover positioning in Arabidopsis thaliana and found that the process can be explained by a predictive coarsening model. Altering the dosage of the E3 ligase HEI10 was shown to predictably modify crossover interference, suggesting a conserved mechanism may regulate crossover positioning in diverse eukaryotes.

NATURE COMMUNICATIONS (2021)

Article Biochemistry & Molecular Biology

RPS5A Promoter-Driven Cas9 Produces Heritable Virus-Induced Genome Editing in Nicotiana attenuata

Youngbin Oh et al.

Summary: The Virus-Induced Genome Editing (VIGE) system was used to induce targeted mutations in seeds without tissue culture. Through utilizing tobacco rattle virus (TRV) carrying guide RNA (gRNA), gene-edited seeds were produced in wild tobacco plants expressing Streptococcus transgenic SpCas9. This method offers an alternative approach to increase the heritability of gene editing in plants.

MOLECULES AND CELLS (2021)

Article Plant Sciences

HIGH CROSSOVER RATE1 encodes PROTEIN PHOSPHATASE X1 and restricts meiotic crossovers in Arabidopsis

Divyashree C. Nageswaran et al.

Summary: HIGH CROSSOVER RATE1 (HCR1) represses meiotic crossovers and encodes PROTEIN PHOSPHATASE X1, which therefore has a major role opposing the function of pro-recombination kinases to restrict crossovers in Arabidopsis.

NATURE PLANTS (2021)

Review Plant Sciences

Counting on Crossovers: Controlled Recombination for Plant Breeding

Ella Taagen et al.

TRENDS IN PLANT SCIENCE (2020)

Article Genetics & Heredity

Levels of Heterochiasmy During Arabidopsis Development as Reported by Fluorescent Tagged Lines

Ramswaroop Saini et al.

G3-GENES GENOMES GENETICS (2020)

Article Biochemistry & Molecular Biology

MSH2 shapes the meiotic crossover landscape in relation to interhomolog polymorphism in Arabidopsis

Alexander R. Blackwell et al.

EMBO JOURNAL (2020)

Article Multidisciplinary Sciences

ASY1 acts as a dosage-dependent antagonist of telomere-led recombination and mediates crossover interference in Arabidopsis

Christophe Lambing et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)

Article Multidisciplinary Sciences

Single gametophyte sequencing reveals that crossover events differ between sexes in maize

Cheng Luo et al.

NATURE COMMUNICATIONS (2019)

Article Biology

Live cell imaging of meiosis in Arabidopsis thaliana

Maria A. Prusicki et al.

ELIFE (2019)

Article Biochemistry & Molecular Biology

Natural Variation in TBP-ASSOCIATED FACTOR 4b Controls Meiotic Crossover and Germline Transcription in Arabidopsis

Emma J. Lawrence et al.

CURRENT BIOLOGY (2019)

Review Plant Sciences

Signaling-mediated meiotic recombination in plants

Jaeil Kim et al.

CURRENT OPINION IN PLANT BIOLOGY (2019)

Article Multidisciplinary Sciences

Meiotic crossovers characterized by haplotype-specific chromosome painting in maize

Livia do Vale Martins et al.

NATURE COMMUNICATIONS (2019)

Article Multidisciplinary Sciences

Linked-read sequencing of gametes allows efficient genome-wide analysis of meiotic recombination

Hequan Sun et al.

NATURE COMMUNICATIONS (2019)

Article Multidisciplinary Sciences

Whole-chromosome paints in maize reveal rearrangements, nuclear domains, and chromosomal relationships

Patrice S. Albert et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)

Article Multidisciplinary Sciences

Unleashing meiotic crossovers in hybrid plants

Joiselle Blanche Fernandes et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)

Article Biochemistry & Molecular Biology

Arabidopsis thaliana FANCD2 Promotes Meiotic Crossover Formation

Marie-Therese Kurzbauer et al.

PLANT CELL (2018)

Article Multidisciplinary Sciences

Massive crossover elevation via combination of HEI10 and recq4a recq4b during Arabidopsis meiosis

Heidi Serra et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)

Article Biochemistry & Molecular Biology

The Number of Meiotic Double-Strand Breaks Influences Crossover Distribution in Arabidopsis

Ming Xue et al.

PLANT CELL (2018)

Article Plant Sciences

Unleashing meiotic crossovers in crops

Delphine Mieulet et al.

NATURE PLANTS (2018)

Article Genetics & Heredity

Recombination Rate Heterogeneity within Arabidopsis Disease Resistance Genes

Kyuha Choi et al.

PLOS GENETICS (2016)

Review Plant Sciences

The Molecular Biology of Meiosis in Plants

Raphael Mercier et al.

ANNUAL REVIEW OF PLANT BIOLOGY, VOL 66 (2015)

Article Genetics & Heredity

Traffic Lines: New Tools for Genetic Analysis in Arabidopsis thaliana

Gang Wu et al.

GENETICS (2015)

Article Plant Sciences

Meiotic recombination hotspots - a comparative view

Kyuha Choi et al.

PLANT JOURNAL (2015)

Article Multidisciplinary Sciences

Recombination patterns in maize reveal limits to crossover homeostasis

Gaganpreet K. Sidhu et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)

Article Multidisciplinary Sciences

Multiple mechanisms limit meiotic crossovers: TOP3α and two BLM homologs antagonize crossovers in parallel to FANCM

Mathilde Seguela-Arnaud et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)

Article Plant Sciences

Looking for natural variation in chiasma frequency in Arabidopsis thaliana

E. Lopez et al.

JOURNAL OF EXPERIMENTAL BOTANY (2012)

Article Cell Biology

Homeostatic control of recombination is implemented progressively in mouse meiosis

Francesca Cole et al.

NATURE CELL BIOLOGY (2012)

Article Biochemistry & Molecular Biology

The Recombinases DMC1 and RAD51 Are Functionally and Spatially Separated during Meiosis in Arabidopsis

Marie-Therese Kurzbauer et al.

PLANT CELL (2012)

Article Multidisciplinary Sciences

FANCM Limits Meiotic Crossovers

Wayne Crismani et al.

SCIENCE (2012)

Article Genetics & Heredity

The Arabidopsis HEI10 Is a New ZMM Protein Related to Zip3

Liudmila Chelysheva et al.

PLOS GENETICS (2012)

Article Biochemistry & Molecular Biology

Genetic Interference: Don't Stand So Close to Me

Luke E. Berchowitz et al.

CURRENT GENOMICS (2010)

Article Multidisciplinary Sciences

Pollen tetrad-based visual assay for meiotic recombination in Arabidopsis

Kirk E. Francis et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)

Article Biochemistry & Molecular Biology

Crossover homeostasis in yeast meiosis

Emmanuelle Martini et al.

Article Plant Sciences

A new seed-based assay for meiotic recombination in Arabidopsis thaliana

C Melamed-Bessudo et al.

PLANT JOURNAL (2005)

Review Biochemistry & Molecular Biology

Whence meiosis?

AM Villeneuve et al.

Article Biochemistry & Molecular Biology

Chiasma formation in Arabidopsis thaliana accession Wassileskija and in two meiotic mutants

ES Moran et al.

CHROMOSOME RESEARCH (2001)