4.6 Review

Metal Cations in G-Quadruplex Folding and Stability

Related references

Note: Only part of the references are listed.
Article Biochemistry & Molecular Biology

A stable RNA G-quadruplex within the 5′-UTR of Arabidopsis thaliana ATR mRNA inhibits translation

Chun Kit Kwok et al.

BIOCHEMICAL JOURNAL (2015)

Article Biochemistry & Molecular Biology

An Independently Folding RNA G-Quadruplex Domain Directly Recruits the 40S Ribosomal Subunit

Debmalya Bhattacharyya et al.

BIOCHEMISTRY (2015)

Article Biochemistry & Molecular Biology

The RNA Stem-Loop to G-Quadruplex Equilibrium Controls Mature MicroRNA Production inside the Cell

Satyaprakash Pandey et al.

BIOCHEMISTRY (2015)

Article Biochemistry & Molecular Biology

A Potassium Ion-Dependent RNA Structural Switch Regulates Human Pre-miRNA 92b Maturation

Gayan Mirihana Arachchilage et al.

CHEMISTRY & BIOLOGY (2015)

Article Chemistry, Inorganic & Nuclear

Cobalt(III)porphyrin to target G-quadruplex DNA

Laurent Sabater et al.

DALTON TRANSACTIONS (2015)

Article Biochemistry & Molecular Biology

Stabilization of the G-quadruplex at the VEGF IRES represses cap-independent translation

Anne Cammas et al.

RNA BIOLOGY (2015)

Article Chemistry, Multidisciplinary

Conformational Transition of a Hairpin Structure to G-Quadruplex within the WNT1 Gene Promoter

Margaret Hsin-Jui Kuo et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2015)

Article Biochemistry & Molecular Biology

Role of G-quadruplex located at 5 end of mRNAs

Prachi Agarwala et al.

BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS (2014)

Article Chemistry, Medicinal

G-Quadruplex Structures and Their Interaction Diversity with Ligands

Sulin Zhang et al.

CHEMMEDCHEM (2014)

Article Multidisciplinary Sciences

RNA G-quadruplexes cause eIF4A-dependent oncogene translation in cancer

Andrew L. Wolfe et al.

NATURE (2014)

Article Biochemistry & Molecular Biology

Structure of Human Telomeric RNA (TERRA): Stacking of Two G-Quadruplex Blocks in K+ Solution

Herry Martadinata et al.

BIOCHEMISTRY (2013)

Article Biochemistry & Molecular Biology

The G-Quadruplex Augments Translation in the 5′ Untranslated Region of Transforming Growth Factor β2

Prachi Agarwala et al.

BIOCHEMISTRY (2013)

Review Biochemistry & Molecular Biology

When secondary comes first - The importance of non-canonical DNA structures

Natalie Saini et al.

BIOCHIMIE (2013)

Article Engineering, Electrical & Electronic

Optical Detection of Lead(II) Ions Using DNA-Based Nanosensor

Kimber L. Brenneman et al.

IEEE SENSORS JOURNAL (2013)

Article Chemistry, Physical

Effect of Loops and G-Quartets on the Stability of RNA G-Quadruplexes

Satyaprakash Pandey et al.

JOURNAL OF PHYSICAL CHEMISTRY B (2013)

Article Biochemistry & Molecular Biology

Stability of RNA quadruplex in open reading frame determines proteolysis of human estrogen receptor α

Tamaki Endoh et al.

NUCLEIC ACIDS RESEARCH (2013)

Article Biochemistry & Molecular Biology

Exploring mRNA 3'-UTR G-quadruplexes: evidence of roles in both alternative polyadenylation and mRNA shortening

Jean-Denis Beaudoin et al.

NUCLEIC ACIDS RESEARCH (2013)

Article Multidisciplinary Sciences

Effect of G-Quadruplex Polymorphism on the Recognition of Telomeric DNA by a Metal Complex

Caterina Musetti et al.

PLOS ONE (2013)

Article Biochemistry & Molecular Biology

Macrocyclic G-Quadruplex Ligands

M. C. Nielsen et al.

CURRENT MEDICINAL CHEMISTRY (2012)

Article Chemistry, Multidisciplinary

An RNA Hairpin to G-Quadruplex Conformational Transition

Anthony Bugaut et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2012)

Article Biochemistry & Molecular Biology

Strand directionality affects cation binding and movement within tetramolecular G-quadruplexes

Primoz Sket et al.

NUCLEIC ACIDS RESEARCH (2012)

Article Biochemistry & Molecular Biology

5′-UTR RNA G-quadruplexes: translation regulation and targeting

Anthony Bugaut et al.

NUCLEIC ACIDS RESEARCH (2012)

Article Biochemistry & Molecular Biology

Potential G-quadruplexes in the human long non-coding transcriptome

Gopal Gunanathan Jayaraj et al.

RNA BIOLOGY (2012)

Article Chemistry, Analytical

Fluorescence Detection of Lead(II) Ions Through Their Induced Catalytic Activity of DNAzymes

Chi-Lin Li et al.

ANALYTICAL CHEMISTRY (2011)

Article Biochemistry & Molecular Biology

Induction of G-quadruplex DNA structure by Zn(II) 5,10,15,20-tetrakis (N-methyl-4-pyridyl)porphyrin

Amlan J. Bhattacharjee et al.

BIOCHIMIE (2011)

Article Biochemistry & Molecular Biology

An RNA G-quadruplex in the 3′ UTR of the proto-oncogene PIM1 represses translation

Amit Arora et al.

RNA BIOLOGY (2011)

Review Biochemistry & Molecular Biology

Research Progress of RNA Quadruplex

Xiaohui Ji et al.

NUCLEIC ACID THERAPEUTICS (2011)

Article Chemistry, Inorganic & Nuclear

Two Metals Are Better than One: Investigations on the Interactions between Dinuclear Metal Complexes and Quadruplex DNA

Kogularamanan Suntharalingam et al.

INORGANIC CHEMISTRY (2010)

Article Chemistry, Multidisciplinary

An RNA G-Quadruplex Is Essential for Cap-Independent Translation Initiation in Human VEGF IRES

Mark J. Morris et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2010)

Article Chemistry, Multidisciplinary

Tetramolecular DNA Quadruplexes in Solution: Insights into Structural Diversity and Cation Movement

Primoz Sket et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2010)

Article Biochemistry & Molecular Biology

How long is too long? Effects of loop size on G-quadruplex stability

Aurore Guedin et al.

NUCLEIC ACIDS RESEARCH (2010)

Article Biochemistry & Molecular Biology

A G-quadruplex structure within the 5'-UTR of TRF2 mRNA represses translation in human cells

Dennis Gomez et al.

NUCLEIC ACIDS RESEARCH (2010)

Article Biochemistry & Molecular Biology

A crystallographic and modelling study of a human telomeric RNA (TERRA) quadruplex

Gavin W. Collie et al.

NUCLEIC ACIDS RESEARCH (2010)

Article Biochemistry & Molecular Biology

5'-UTR G-quadruplex structures acting as translational repressors

Jean-Denis Beaudoin et al.

NUCLEIC ACIDS RESEARCH (2010)

Article Biochemistry & Molecular Biology

Repression of Translation of Human Estrogen Receptor α by G-Quadruplex Formation

Graham D. Balkwill et al.

BIOCHEMISTRY (2009)

Review Biochemistry & Molecular Biology

G-quadruplex nucleic acids as therapeutic targets

Shankar Balasubramanian et al.

CURRENT OPINION IN CHEMICAL BIOLOGY (2009)

Review Biochemistry & Molecular Biology

The structures of quadruplex nucleic acids and their drug complexes

Stephen Neidle

CURRENT OPINION IN STRUCTURAL BIOLOGY (2009)

Article Chemistry, Organic

Cation localization and movement within DNA thrombin binding aptamer in solution

Marko Trajkovski et al.

ORGANIC & BIOMOLECULAR CHEMISTRY (2009)

Article Biochemistry & Molecular Biology

Sequence effects in single-base loops for quadruplexes

Aurore Guedin et al.

BIOCHIMIE (2008)

Review Biochemistry & Molecular Biology

Targeting telomeres and telomerase

Anne De Cian et al.

BIOCHIMIE (2008)

Review Chemistry, Multidisciplinary

Four-stranded nucleic acids: structure, function and targeting of G-quadruplexes

Julian Leon Huppert

CHEMICAL SOCIETY REVIEWS (2008)

Article Chemistry, Physical

Effect of loop orientation on quadruplex-TMPyP4 interaction

Amit Arora et al.

JOURNAL OF PHYSICAL CHEMISTRY B (2008)

Article Chemistry, Multidisciplinary

Stacking and Not Solely Topology of T3 Loops Controls Rigidity and Ammonium Ion Movement within d(G4T3G4)2 G-Quadruplex

Peter Podbevsek et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2008)

Article Biochemistry & Molecular Biology

Conserved elements with potential to form polymorphic G-quadruplex structures in the first intron of human genes

Johanna Eddy et al.

NUCLEIC ACIDS RESEARCH (2008)

Article Biochemistry & Molecular Biology

G-quadruplexes: the beginning and end of UTRs

Julian Leon Huppert et al.

NUCLEIC ACIDS RESEARCH (2008)

Review Chemistry, Organic

A hitchhiker's guide to G-quadruplex ligands

David Monchaud et al.

ORGANIC & BIOMOLECULAR CHEMISTRY (2008)

Article Biochemistry & Molecular Biology

Inhibition of translation in living eukaryotic cells by an RNA G-quadruplex motif

Amit Arora et al.

Article Chemistry, Multidisciplinary

Observation of the coexistence of sodium and calcium ions in a DNA G-quadruplex ion channel

Michael P. H. Lee et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2007)

Article Chemistry, Multidisciplinary

Not all G-quadruplexes exhibit ion-channel-like properties:: NMR study of ammonium ion (non)movement within the d(G3T4G4)2 quadruplex

Primoz Sket et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2007)

Article Biochemistry & Molecular Biology

Intramolecular DNA quadruplexes with different arrangements of short and long loops

Phillip A. Rachwal et al.

NUCLEIC ACIDS RESEARCH (2007)

Article Biochemistry & Molecular Biology

Sequence effects of single base loops in intramolecular quadruplex DNA

Phillip A. Rachwal et al.

FEBS LETTERS (2007)

Article Biochemistry & Molecular Biology

NMR evaluation of ammonium ion movement within a unimolecular G-quadruplex in solution

Peter Podbevsek et al.

NUCLEIC ACIDS RESEARCH (2007)

Article Biochemistry & Molecular Biology

An RNA G-quadruplex in the 5′ UTR of the NRAS proto-oncogene modulates translation

Sunita Kumari et al.

NATURE CHEMICAL BIOLOGY (2007)

Article Biochemistry & Molecular Biology

Effect of G-tract length on the topology and stability of intramolecular DNA quadruplexes

Phillip A. Rachwal et al.

BIOCHEMISTRY (2007)

Article Biochemistry & Molecular Biology

A topological classification of G-quadruplex structures

V. Esposito et al.

NUCLEOSIDES NUCLEOTIDES & NUCLEIC ACIDS (2007)

Article Biochemistry & Molecular Biology

G-quadruplexes in promoters throughout the human genome

Julian L. Huppert et al.

NUCLEIC ACIDS RESEARCH (2007)

Article Chemistry, Multidisciplinary

Trivalent lanthanide metal ions promote formation of stacking G-quartets

Irene C. M. Kwan et al.

CHEMICAL COMMUNICATIONS (2007)

Article Biochemistry & Molecular Biology

NMR solution structure of the major G-quadruplex structure formed in the human BCL2 promoter region

Jixun Dai et al.

NUCLEIC ACIDS RESEARCH (2006)

Article Biochemistry & Molecular Biology

Crystallization and characterization of the thallium form of the Oxytricha nova G-quadruplex

Michelle L. Gill et al.

NUCLEIC ACIDS RESEARCH (2006)

Article Biochemistry & Molecular Biology

Characterization of an unusual folding pattern in a catalytically active guanine quadruplex structure

Pinaki R. Majhi et al.

BIOPOLYMERS (2006)

Article Biochemistry & Molecular Biology

A conserved quadruplex motif located in a transcription activation site of the human c-kit oncogene

Himesh Fernando et al.

BIOCHEMISTRY (2006)

Article Chemistry, Multidisciplinary

Deconvoluting the structural and drug-recognition complexity of the G-quadruplex-forming region upstream of the bcl-2 P1 promoter

TS Dexheimer et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2006)

Article Biochemistry & Molecular Biology

Predictive modelling of topology and loop variations in dimeric DNA quadruplex structures

Pascale Hazel et al.

NUCLEIC ACIDS RESEARCH (2006)

Article Biochemistry & Molecular Biology

G-quadruplex formation within the promoter of the KRAS proto-oncogene and its effect on transcription

Susanna Cogoi et al.

NUCLEIC ACIDS RESEARCH (2006)

Article Chemistry, Multidisciplinary

205TI NMR methods for the characterization of monovalent cation binding to nucleic acids

ML Gill et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2005)

Article Biochemistry & Molecular Biology

Role of loop residues and cations on the formation and stability of dimeric DNA G-quadruplexes

M Cevec et al.

BIOCHEMISTRY (2005)

Article Chemistry, Multidisciplinary

Dynamics and thermodynamics of dimerization of parallel G-quadruplexed DNA formed from d(TTAGn) (n=3-5)

Y Kato et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2005)

Article Biochemistry & Molecular Biology

Highly prevalent putative quadruplex sequence motifs in human DNA

AK Todd et al.

NUCLEIC ACIDS RESEARCH (2005)

Article Biochemistry & Molecular Biology

Identification of mixed di-cation forms of G-quadruplex in solution

P Sket et al.

NUCLEIC ACIDS RESEARCH (2005)

Article Biochemistry & Molecular Biology

Prevalence of quadruplexes in the human genome

JL Huppert et al.

NUCLEIC ACIDS RESEARCH (2005)

Article Biochemistry & Molecular Biology

Influence of loop size on the stability of intramolecular DNA quadruplexes

A Risitano et al.

NUCLEIC ACIDS RESEARCH (2004)

Article Biochemistry & Molecular Biology

A thymine tetrad in d(TGGGGT) quadruplexes stabilized with Tl+/Na+ ions

C Cáceres et al.

NUCLEIC ACIDS RESEARCH (2004)

Article Chemistry, Multidisciplinary

Loop-length-dependent folding of G-quadruplexes

P Hazel et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2004)

Article Chemistry, Multidisciplinary

G-quadruplex formation of thrombin-binding aptamer detected by electrospray ionization mass spectrometry

M Vairamani et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2003)

Article Biochemistry & Molecular Biology

Pb EXAFS studies on DNA quadruplexes: Identification of metal ion binding site

IV Smirnov et al.

BIOCHEMISTRY (2002)

Article Biochemistry & Molecular Biology

A dimeric RNA quadruplex architecture comprised of two G:G(:A):G:G(:A) hexads, G:G:G:G tetrads and UUUU loops

H Liu et al.

JOURNAL OF MOLECULAR BIOLOGY (2002)

Article Multidisciplinary Sciences

Direct evidence for a G-quadruplex in a promoter region and its targeting with a small molecule to repress c-MYC transcription

A Siddiqui-Jain et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)

Article Biochemistry & Molecular Biology

The solution structure of d(G4T4G3)2:: a bimolecular G-quadruplex with a novel fold

M Crnugelj et al.

JOURNAL OF MOLECULAR BIOLOGY (2002)

Article Biochemistry & Molecular Biology

Crystal structure of the potassium form of an Oxytricha nova G-quadruplex

S Haider et al.

JOURNAL OF MOLECULAR BIOLOGY (2002)

Article Multidisciplinary Sciences

Crystal structure of parallel quadruplexes from human telomeric DNA

GN Parkinson et al.

NATURE (2002)

Article Chemistry, Physical

Origin of Na+/K+ selectivity of the guanine tetraplexes in water:: The theoretical rationale

JD Gu et al.

JOURNAL OF PHYSICAL CHEMISTRY A (2002)

Article Multidisciplinary Sciences

X-ray analysis of an RNA tetraplex (UGGGGU)4 with divalent Sr2+ ions at subatomic resolution (0.61Å)

JP Deng et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2001)

Article Chemistry, Multidisciplinary

Folding of the thrombin aptamer into a G-quadruplex with Sr2+:: Stability, heat, and hydration

BI Kankia et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2001)

Article Biochemistry & Molecular Biology

DNA G-quartets in a 1.86 Å resolution structure of an Oxytricha nova telomeric protein-DNA complex

MP Horvath et al.

JOURNAL OF MOLECULAR BIOLOGY (2001)

Article Biochemistry & Molecular Biology

Effect of divalent cations on antiparallel G-quartet structure of d(G4T4C4)

D Miyoshi et al.

FEBS LETTERS (2001)

Review Biochemistry & Molecular Biology

G-quadruplex DNA structures - Variations on a theme

T Simonsson

BIOLOGICAL CHEMISTRY (2001)

Article Biochemistry & Molecular Biology

Cation-dependent conformational switches in d-TGGCGGC containing two triplet repeats of Fragile X Syndrome: NMR observations

PK Patel et al.

BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2000)

Article Chemistry, Multidisciplinary

Direct detection of monovalent metal ion binding to a DNA G-quartet by 205Tl NMR

S Basu et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2000)

Article Biochemistry & Molecular Biology

Structures of the potassium-saturated, 2:1, and intermediate, 1:1,forms of a quadruplex DNA

VM Marathias et al.

NUCLEIC ACIDS RESEARCH (2000)

Article Biochemistry & Molecular Biology

Effect of loop sequence and size on DNA aptamer stability

I Smirnov et al.

BIOCHEMISTRY (2000)

Article Biochemistry & Molecular Biology

Lead is unusually effective in sequence-specific folding of DNA

I Smirnov et al.

JOURNAL OF MOLECULAR BIOLOGY (2000)

Article Biochemistry & Molecular Biology

A dimeric DNA interface stabilized by stacked A•(G•G•G•G)•A hexads and coordinated monovalent cations

A Kettani et al.

JOURNAL OF MOLECULAR BIOLOGY (2000)