4.7 Article

Contribution of hydrophobic interactions to protein mechanical stability

Related references

Note: Only part of the references are listed.
Article Biology

N501Y mutation of spike protein in SARS-CoV-2 strengthens its binding to receptor ACE2

Fang Tian et al.

Summary: Research indicates that the N501Y mutation in SARS-CoV-2 variants strengthens its interaction with ACE2, leading to an increased transmission rate, highlighting the need for close monitoring of future mutations in the virus' RBD.

ELIFE (2021)

Article Chemistry, Physical

Unfolding mechanism and free energy landscape of single, stable, alpha helices at low pull speeds

Ana Elisa Bergues-Pupo et al.

SOFT MATTER (2020)

Review Biochemistry & Molecular Biology

Principles of Protein Stability and Their Application in Computational Design

Adi Goldenzweig et al.

ANNUAL REVIEW OF BIOCHEMISTRY, VOL 87 (2018)

Article Multidisciplinary Sciences

Molecular mechanism of extreme mechanostability in a pathogen adhesin

Lukas F. Milles et al.

SCIENCE (2018)

Article Chemistry, Multidisciplinary

Molecular mechanics of coiled coils loaded in the shear geometry

Melis Goktas et al.

CHEMICAL SCIENCE (2018)

Article Chemistry, Multidisciplinary

Dynamic undocking and the quasi-bound state as tools for drug discovery

Sergio Ruiz-Carmona et al.

NATURE CHEMISTRY (2017)

Article Biochemistry & Molecular Biology

Hydrophobic-hydrophilic forces in protein folding

Stewart R. Durell et al.

BIOPOLYMERS (2017)

Review Chemistry, Physical

Molecular Shape and the Hydrophobic Effect

Matthew B. Hillyer et al.

ANNUAL REVIEW OF PHYSICAL CHEMISTRY, VOL 67 (2016)

Article Multidisciplinary Sciences

How the hydrophobic factor drives protein folding

Robert L. Baldwin et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)

Article Physics, Multidisciplinary

Curvature Dependence of Hydrophobic Hydration Dynamics

R. Gregor Weiss et al.

PHYSICAL REVIEW LETTERS (2015)

Review Biochemistry & Molecular Biology

Forces stabilizing proteins

C. Nick Pace et al.

FEBS LETTERS (2014)

Article Biochemistry & Molecular Biology

Stable Single α-Helices Are Constant Force Springs in Proteins

Marcin Wolny et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2014)

Article Multidisciplinary Sciences

Deleting titin's I-band/A-band junction reveals critical roles for titin in biomechanical sensing and cardiac function

Henk L. Granzier et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)

Article Biochemistry & Molecular Biology

Contribution of hydrogen bonds to protein stability

C. Nick Pace et al.

PROTEIN SCIENCE (2014)

Review Biochemistry & Molecular Biology

The new view of hydrophobic free energy

Robert L. Baldwin

FEBS LETTERS (2013)

Article Chemistry, Multidisciplinary

CHARMM36 all-atom additive protein force field: Validation based on comparison to NMR data

Jing Huang et al.

JOURNAL OF COMPUTATIONAL CHEMISTRY (2013)

Article Biophysics

The Molecular Mechanism Underlying Mechanical Anisotropy of the Protein GB1

Yongnan Devin Li et al.

BIOPHYSICAL JOURNAL (2012)

Review Chemistry, Multidisciplinary

Single molecule force spectroscopy using polyproteins

Toni Hoffmann et al.

CHEMICAL SOCIETY REVIEWS (2012)

Article Multidisciplinary Sciences

Direct observation of a force-induced switch in the anisotropic mechanical unfolding pathway of a protein

Bharat Jagannathan et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Article Chemistry, Multidisciplinary

Shielded Hydrogen Bonds as Structural Determinants of Binding Kinetics: Application in Drug Design

Peter Schmidtke et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2011)

Article Physics, Fluids & Plasmas

Direction-dependent mechanical unfolding and green fluorescent protein as a force sensor

M. Caraglio et al.

PHYSICAL REVIEW E (2011)

Article Chemistry, Medicinal

Enthalpic Efficiency of Ligand Binding

Gyoergy G. Ferenczy et al.

JOURNAL OF CHEMICAL INFORMATION AND MODELING (2010)

Article Biochemistry & Molecular Biology

The Structure of the FnIII Tandem A77-A78 Points to a Periodically Conserved Architecture in the Myosin-Binding Region of Titin

Rainer M. Bucher et al.

JOURNAL OF MOLECULAR BIOLOGY (2010)

Article Multidisciplinary Sciences

Computational and single-molecule force studies of a macro domain protein reveal a key molecular determinant for mechanical stability

Dora L. Guzman et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Article Biochemistry & Molecular Biology

Calculation of the free energy of association for protein complexes

Nancy Horton et al.

PROTEIN SCIENCE (2010)

Review Biochemistry & Molecular Biology

Discovery Through the Computational Microscope

Eric H. Lee et al.

STRUCTURE (2009)

Article Biochemical Research Methods

Mechanical Network in Titin Immunoglobulin from Force Distribution Analysis

Wolfram Stacklies et al.

PLOS COMPUTATIONAL BIOLOGY (2009)

Article Biochemistry & Molecular Biology

The Thermodynamics of Protein-Ligand Interaction and Solvation: Insights for Ligand Design

Tjelvar S. G. Olsson et al.

JOURNAL OF MOLECULAR BIOLOGY (2008)

Article Chemistry, Physical

Pulling direction as a reaction coordinate for the mechanical unfolding of single molecules

Robert B. Best et al.

JOURNAL OF PHYSICAL CHEMISTRY B (2008)

Article Physics, Fluids & Plasmas

Role of pulling direction in understanding the energy landscape of proteins

R. Rajesh et al.

PHYSICAL REVIEW E (2008)

Article Physics, Multidisciplinary

Asymptotic strength limit of hydrogen-bond assemblies in proteins at vanishing pulling rates

Sinan Keten et al.

PHYSICAL REVIEW LETTERS (2008)

Article Multidisciplinary Sciences

Mechanoenzymatics of titin kinase

Elias M. Puchner et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Article Multidisciplinary Sciences

Designing an extracellular matrix protein with enhanced mechanical stability

Sean P. Ng et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)

Article Multidisciplinary Sciences

Signatures of hydrophobic collapse in extended proteins captured with force spectroscopy

Kirstin A. Walther et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)

Review Chemistry, Multidisciplinary

Scalable molecular dynamics with NAMD

JC Phillips et al.

JOURNAL OF COMPUTATIONAL CHEMISTRY (2005)

Review Multidisciplinary Sciences

Interfaces and the driving force of hydrophobic assembly

D Chandler

NATURE (2005)

Article Biophysics

Mechanically unfolding the small, topologically simple protein L

DJ Brockwell et al.

BIOPHYSICAL JOURNAL (2005)

Article Biochemistry & Molecular Biology

Mechanical unfolding intermediates observed by single-molecule force spectroscopy in a fibronectin type III module

LW Li et al.

JOURNAL OF MOLECULAR BIOLOGY (2005)

Article Biochemistry & Molecular Biology

Correlation between sequence hydrophobicity and surface-exposure pattern of database proteins

S Moelbert et al.

PROTEIN SCIENCE (2004)

Article Multidisciplinary Sciences

Close agreement between the orientation dependence of hydrogen bonds observed in protein structures and quantum mechanical calculations

AV Morozov et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)

Article Multidisciplinary Sciences

Structure and functional significance of mechanically unfolded fibronectin type III1 intermediates

M Gao et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)

Article Biochemistry & Molecular Biology

The mechanical stability of ubiquitin is linkage dependent

M Carrion-Vazquez et al.

NATURE STRUCTURAL BIOLOGY (2003)

Article Biochemistry & Molecular Biology

Pulling geometry defines the mechanical resistance of a β-sheet protein

DJ Brockwell et al.

NATURE STRUCTURAL BIOLOGY (2003)

Article Chemistry, Physical

The myosin coiled-coil is a truly elastic protein structure

I Schwaiger et al.

NATURE MATERIALS (2002)

Article Biochemistry & Molecular Biology

Identifying unfolding intermediates of FN-III10 by steered molecular dynamics

M Gao et al.

JOURNAL OF MOLECULAR BIOLOGY (2002)

Article Biochemistry & Molecular Biology

Pathways and intermediates in forced unfolding of spectrin repeats

SM Altmann et al.

STRUCTURE (2002)

Article Biochemistry & Molecular Biology

The mechanical hierarchies of fibronectin observed with single-molecule AFM

AF Oberhauser et al.

JOURNAL OF MOLECULAR BIOLOGY (2002)

Article Chemistry, Medicinal

Measurement of the length of the α helical section of a peptide directly using atomic force microscopy

S Takeda et al.

CHEMICAL & PHARMACEUTICAL BULLETIN (2001)

Article Biophysics

Simulated refolding of stretched titin immunoglobulin domains

M Gao et al.

BIOPHYSICAL JOURNAL (2001)

Article Biochemistry & Molecular Biology

Spring mechanics of α-helical polypeptide

A Idiris et al.

PROTEIN ENGINEERING (2000)

Article Biochemistry & Molecular Biology

The Protein Data Bank

HM Berman et al.

NUCLEIC ACIDS RESEARCH (2000)