Related references
Note: Only part of the references are listed.Larval transcriptomic responses of a stony coral, Acropora tenuis, during initial contact with the native symbiont, Symbiodinium microadriaticum
Yuki Yoshioka et al.
SCIENTIFIC REPORTS (2022)
Eighteen Coral Genomes Reveal the Evolutionary Origin of Acropora Strategies to Accommodate Environmental Changes
Chuya Shinzato et al.
MOLECULAR BIOLOGY AND EVOLUTION (2021)
Whole-Genome Sequencing Highlights Conservative Genomic Strategies of a Stress-Tolerant, Long-Lived Scleractinian Coral, Porites australiensis Vaughan, 1918
Chuya Shinzato et al.
GENOME BIOLOGY AND EVOLUTION (2021)
The Dfam community resource of transposable element families, sequence models, and genome annotations
Jessica Storer et al.
MOBILE DNA (2021)
A stony coral cell atlas illuminates the molecular and cellular basis of coral symbiosis, calcification, and immunity
Shani Levy et al.
CELL (2021)
In vitro Symbiosis of Reef-Building Coral Cells With Photosynthetic Dinoflagellates
Kaz Kawamura et al.
FRONTIERS IN MARINE SCIENCE (2021)
Whole-Genome Transcriptome Analyses of Native Symbionts Reveal Host Coral Genomic Novelties for Establishing Coral-Algae Symbioses
Yuki Yoshioka et al.
GENOME BIOLOGY AND EVOLUTION (2021)
BRAKER2: automatic eukaryotic genome annotation with GeneMark-EP plus and AUGUSTUS supported by a protein database
Tomas Bruna et al.
NAR GENOMICS AND BIOINFORMATICS (2021)
Whole-Genome Sequencing Highlights Conservative Genomic Strategies of a Stress-Tolerant, Long-Lived Scleractinian Coral, Porites australiensis Vaughan, 1918
Chuya Shinzato et al.
GENOME BIOLOGY AND EVOLUTION (2021)
Lineage dynamics of the endosymbiotic cell type in the soft coralXenia
Minjie Hu et al.
NATURE (2020)
Population genetics of the coral Acropora millepora: Toward genomic prediction of bleaching
Zachary L. Fuller et al.
SCIENCE (2020)
Genome analysis of the rice coral Montipora capitata
Alexander Shumaker et al.
SCIENTIFIC REPORTS (2019)
The Whole-Genome Sequence of the Coral Acropora millepora
Hua Ying et al.
GENOME BIOLOGY AND EVOLUTION (2019)
Draft Genome of the Rice Coral Montipora capitata Obtained from Linked-Read Sequencing
Martin Helmkampf et al.
GENOME BIOLOGY AND EVOLUTION (2019)
Immune genes are hotspots of shared positive selection across birds and mammals
Allison J. Shultz et al.
ELIFE (2019)
OrthoFinder: phylogenetic orthology inference for comparative genomics
David M. Emms et al.
GENOME BIOLOGY (2019)
MAPLE 2.3.0: an improved system for evaluating the functionomes of genomes and metagenomes
Wataru Arai et al.
BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY (2018)
Cnidarian Cell Type Diversity and Regulation Revealed by Whole-Organism Single-Cell RNA-Seq
A. SebePedros et al.
CELL (2018)
CRISPR/Cas9-mediated genome editing in a reef-building coral
Phillip A. Clevesa et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)
Spatial and temporal patterns of mass bleaching of corals in the Anthropocene
Terry P. Hughes et al.
SCIENCE (2018)
Purge Haplotigs: allelic contig reassignment for third-gen diploid genome assemblies
Michael J. Roach et al.
BMC BIOINFORMATICS (2018)
Comparative genomics reveals the distinct evolutionary trajectories of the robust and complex coral lineages
Hua Ying et al.
GENOME BIOLOGY (2018)
Transcriptome dynamics over a lunar month in a broadcast spawning acroporid coral
Matthew J. Oldach et al.
MOLECULAR ECOLOGY (2017)
Salmon provides fast and bias-aware quantification of transcript expression
Rob Patro et al.
NATURE METHODS (2017)
DeepLoc: prediction of protein subcellular localization using deep learning
Jose Juan Almagro Armenteros et al.
BIOINFORMATICS (2017)
Coral Reef Ecosystems under Climate Change and Ocean Acidification
Ove Hoegh-Guldberg et al.
FRONTIERS IN MARINE SCIENCE (2017)
The Mesoderm-Forming Gene brachyury Regulates Ectoderm-Endoderm Demarcation in the Coral Acropora digitifera
Yuuri Yasuoka et al.
CURRENT BIOLOGY (2016)
Ocean acidification influences host DNA methylation and phenotypic plasticity in environmentally susceptible corals
Hollie M. Putnam et al.
EVOLUTIONARY APPLICATIONS (2016)
The transcriptomic response of the coral Acropora digitifera to a competent Symbiodinium strain: the symbiosome as an arrested early phagosome
A. R. Mohamed et al.
MOLECULAR ECOLOGY (2016)
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
Felipe A. Simao et al.
BIOINFORMATICS (2015)
Species-specific differences in thermal tolerance may define susceptibility to intracellular acidosis in reef corals
Emma M. Gibbin et al.
MARINE BIOLOGY (2015)
Transcriptomic differences between day and night in Acropora millepora provide new insights into metabolite exchange and light-enhanced calcification in corals
A. Bertucci et al.
MOLECULAR ECOLOGY (2015)
StringTie enables improved reconstruction of a transcriptome from RNA-seq reads
Mihaela Pertea et al.
NATURE BIOTECHNOLOGY (2015)
HISAT: a fast spliced aligner with low memory requirements
Daehwan Kim et al.
NATURE METHODS (2015)
InterProScan 5: genome-scale protein function classification
Philip Jones et al.
BIOINFORMATICS (2014)
Improving Genome-Wide Scans of Positive Selection by Using Protein Isoforms of Similar Length
Jose Luis Villanueva-Canas et al.
GENOME BIOLOGY AND EVOLUTION (2013)
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
Kazutaka Katoh et al.
MOLECULAR BIOLOGY AND EVOLUTION (2013)
Multiple Symbiont Acquisition Strategies as an Adaptive Mechanism in the Coral Stylophora pistillata
Kristen A. Byler et al.
PLOS ONE (2013)
A novel big protein TPRBK possessing 25 units of TPR motif is essential for the progress of mitosis and cytokinesis
Tomohiro Izumiyama et al.
GENE (2012)
Whole Transcriptome Analysis of the Coral Acropora millepora Reveals Complex Responses to CO2-driven Acidification during the Initiation of Calcification
A. Moya et al.
MOLECULAR ECOLOGY (2012)
Using the Acropora digitifera genome to understand coral responses to environmental change
Chuya Shinzato et al.
NATURE (2011)
The evolutionary origin of orphan genes
Diethard Tautz et al.
NATURE REVIEWS GENETICS (2011)
Identification of Fast-Evolving Genes in the Scleractinian Coral Acropora Using Comparative EST Analysis
Akira Iguchi et al.
PLOS ONE (2011)
High amino acid diversity and positive selection at a putative coral immunity gene (tachylectin-2)
Marshall L. Hayes et al.
BMC EVOLUTIONARY BIOLOGY (2010)
A complex journey: transmission of microbial symbionts
Monika Bright et al.
NATURE REVIEWS MICROBIOLOGY (2010)
KaKs_Calculator 2.0: A Toolkit Incorporating Gamma-Series Methods and Sliding Window Strategies
Dapeng Wang et al.
GENOMICS PROTEOMICS & BIOINFORMATICS (2010)
Systematic and Biogeographical Patterns in the Reproductive Biology of Scleractinian Corals
Andrew H. Baird et al.
ANNUAL REVIEW OF ECOLOGY EVOLUTION AND SYSTEMATICS (2009)
BLAST plus : architecture and applications
Christiam Camacho et al.
BMC BIOINFORMATICS (2009)
Turning a hobby into a job: How duplicated genes find new functions
Gavin C. Conant et al.
NATURE REVIEWS GENETICS (2008)
One-third of reef-building corals face elevated extinction risk from climate change and local impacts
Kent E. Carpenter et al.
SCIENCE (2008)
On homology searches by protein Blast and the characterization of the age of genes
M. Mar Alba et al.
BMC EVOLUTIONARY BIOLOGY (2007)
PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments
Mikita Suyama et al.
NUCLEIC ACIDS RESEARCH (2006)
De novo identification of repeat families in large genomes
AL Price et al.
BIOINFORMATICS (2005)
Confronting the coral reef crisis
DR Bellwood et al.
NATURE (2004)
The transient receptor potential channel on the yeast vacuole is mechanosensitive
XL Zhou et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)
Social feeding in Caenorhabditis elegans is induced by neurons that detect aversive stimuli
M de Bono et al.
NATURE (2002)
Marine biodiversity hotspots and conservation priorities for tropical reefs
CM Roberts et al.
SCIENCE (2002)
Internal Ca2+ release in yeast is triggered by hypertonic shock and mediated by a TRP channel homologue
V Denis et al.
JOURNAL OF CELL BIOLOGY (2002)
Phylogenetic relationships in the coral family Acroporidae, reassessed by inference from mitochondrial genes
H Fukami et al.
ZOOLOGICAL SCIENCE (2000)
KEGG: Kyoto Encyclopedia of Genes and Genomes
M Kanehisa et al.
NUCLEIC ACIDS RESEARCH (2000)
Share Paper
