Related references
Note: Only part of the references are listed.Using interdisciplinary, phylogeny-guided approaches to understand the evolution of plant metabolism
Craig A. Schenck et al.
PLANT MOLECULAR BIOLOGY (2022)
New and emerging concepts in the evolution and function of plant biosynthetic gene clusters
Guy Polturak et al.
CURRENT OPINION IN GREEN AND SUSTAINABLE CHEMISTRY (2022)
Modulation of Arabidopsis root growth by specialized triterpenes
Yuechen Bai et al.
NEW PHYTOLOGIST (2021)
Using Gene Expression to Study Specialized Metabolism-A Practical Guide
Riccardo Delli-Ponti et al.
FRONTIERS IN PLANT SCIENCE (2021)
Expansion within the CYP71D subfamily drives the heterocyclization of tanshinones synthesis in Salvia miltiorrhiza
Ying Ma et al.
NATURE COMMUNICATIONS (2021)
Plant Pan-Genomics Comes of Age
Li Lei et al.
ANNUAL REVIEW OF PLANT BIOLOGY, VOL 72, 2021 (2021)
It happened again: Convergent evolution of acylglucose specialized metabolism in black nightshade and wild tomato
Yann-Ru Lou et al.
SCIENCE ADVANCES (2021)
Polyploidy underlies co-option and diversification of biosynthetic triterpene pathways in the apple tribe
Wenbing Su et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2021)
An Oryza-specific hydroxycinnamoyl tyramine gene cluster contributes to enhanced disease resistance
Shuangqian Shen et al.
SCIENCE BULLETIN (2021)
Pan-genome analysis of 33 genetically diverse rice accessions reveals hidden genomic variations
Peng Qin et al.
CELL (2021)
Plant cytochrome P450 plasticity and evolution
Cecilie Cetti Hansen et al.
MOLECULAR PLANT (2021)
Mining genomes to illuminate the specialized chemistry of life
Marnix H. Medema et al.
NATURE REVIEWS GENETICS (2021)
Analysis of the Coptis chinensis genome reveals the diversification of protoberberine-type alkaloids
Yifei Liu et al.
NATURE COMMUNICATIONS (2021)
Whole-genome microsynteny-based phylogeny of angiosperms
Tao Zhao et al.
NATURE COMMUNICATIONS (2021)
The emerging role of biosynthetic gene clusters in plant defense and plant interactions
Guy Polturak et al.
PLOS PATHOGENS (2021)
Plant genomes: Markers of evolutionary history and drivers of evolutionary change
Pamela S. Soltis et al.
PLANTS PEOPLE PLANET (2021)
Plant NLR diversity: the known unknowns of pan-NLRomes
A. Cristina Barragan et al.
PLANT CELL (2021)
Structural variation in the sequencing era
Steve S. Ho et al.
NATURE REVIEWS GENETICS (2020)
Drivers of metabolic diversification: how dynamic genomic neighbourhoods generate new biosynthetic pathways in the Brassicaceae
Zhenhua Liu et al.
NEW PHYTOLOGIST (2020)
A Pathogen-Responsive Gene Cluster for Highly Modified Fatty Acids in Tomato
Ju Eun Jeon et al.
CELL (2020)
Trait associations in the pangenome of pigeon pea (Cajanus cajan)
Junliang Zhao et al.
PLANT BIOTECHNOLOGY JOURNAL (2020)
Gene clustering and copy number variation in alkaloid metabolic pathways of opium poppy
Qiushi Li et al.
NATURE COMMUNICATIONS (2020)
Chromosome-level assemblies of multiple Arabidopsis genomes reveal hotspots of rearrangements with altered evolutionary dynamics
Wen-Biao Jiao et al.
NATURE COMMUNICATIONS (2020)
The evolution of metabolism: How to test evolutionary hypotheses at the genomic level
Federico Scossa et al.
COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL (2020)
Frequency, Origins, and Evolutionary Role of Chromosomal Inversions in Plants
Kaichi Huang et al.
FRONTIERS IN PLANT SCIENCE (2020)
Gene and genome duplications in the evolution of chemodiversity: perspectives from studies of Lamiaceae
Benjamin R. Lichman et al.
CURRENT OPINION IN PLANT BIOLOGY (2020)
Discovery and engineering of colchicine alkaloid biosynthesis
Ryan S. Nett et al.
NATURE (2020)
Plant Secondary Metabolites as Defenses, Regulators, and Primary Metabolites: The Blurred Functional Trichotomy
Matthias Erb et al.
PLANT PHYSIOLOGY (2020)
Active and repressed biosynthetic gene clusters have distinct chromosome states
Hans-Wilhelm Nutzmann et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)
Formation and diversification of a paradigm biosynthetic gene cluster in plants
Zhenhua Liu et al.
NATURE COMMUNICATIONS (2020)
Plant Single-Cell Metabolomics-Challenges and Perspectives
Leonardo Perez de Souza et al.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2020)
Selection of a subspecies-specific diterpene gene cluster implicated in rice disease resistance
Chuansong Zhan et al.
NATURE PLANTS (2020)
Eight high-quality genomes reveal pan-genome architecture and ecotype differentiation of Brassica napus
Jia-Ming Song et al.
NATURE PLANTS (2020)
Linking genomics and metabolomics to chart specialized metabolic diversity
Justin J. J. van Der Hooft et al.
CHEMICAL SOCIETY REVIEWS (2020)
Plant pan-genomes are the new reference
Philipp E. Bayer et al.
NATURE PLANTS (2020)
The genome evolution and domestication of tropical fruit mango
Peng Wang et al.
GENOME BIOLOGY (2020)
Robust predictions of specialized metabolism genes through machine learning
Bethany M. Moore et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)
The tomato pan-genome uncovers new genes and a rare allele regulating fruit flavor
Lei Gao et al.
NATURE GENETICS (2019)
A specialized metabolic network selectively modulates Arabidopsis root microbiota
Ancheng C. Huang et al.
SCIENCE (2019)
The Sweet Side of Plant-Specialized Metabolism
Thomas Louveau et al.
COLD SPRING HARBOR PERSPECTIVES IN BIOLOGY (2019)
Purine Permease-Type Benzylisoquinoline Alkaloid Transporters in Opium Poppy
Mehran Dastmalchi et al.
PLANT PHYSIOLOGY (2019)
Exploring and Exploiting Pan-genomics for Crop Improvement
Yongfu Tao et al.
MOLECULAR PLANT (2019)
Exploring the Diversity of Plant Metabolism
Chuanying Fang et al.
TRENDS IN PLANT SCIENCE (2019)
Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants
Xin Qiao et al.
GENOME BIOLOGY (2019)
The biosynthetic origin of psychoactive kavalactones in kava
Tomas Pluskal et al.
NATURE PLANTS (2019)
Whole-Genome Duplication and Plant Macroevolution
James W. Clark et al.
TRENDS IN PLANT SCIENCE (2018)
Gene-guided discovery and engineering of branched cyclic peptides in plants
Roland D. Kersten et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)
The PhytoClust tool for metabolic gene clusters discovery in plant genomes
Nadine Topfer et al.
NUCLEIC ACIDS RESEARCH (2017)
plantiSMASH: automated identification, annotation and expression analysis of plant biosynthetic gene clusters
Satria A. Kautsar et al.
NUCLEIC ACIDS RESEARCH (2017)
A Global Coexpression Network Approach for Connecting Genes to Specialized Metabolic Pathways in Plants
Jennifer H. Wisecaver et al.
PLANT CELL (2017)
Wild tobacco genomes reveal the evolution of nicotine biosynthesis
Shuqing Xu et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)
Genome of wild olive and the evolution of oil biosynthesis
Turgay Unver et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)
Promiscuity, impersonation and accommodation: evolution of plant specialized metabolism
Bryan J. Leong et al.
CURRENT OPINION IN STRUCTURAL BIOLOGY (2017)
1,135 Genomes Reveal the Global Pattern of Polymorphism in Arabidopsis thaliana
Carlos Alonso-Blanco et al.
CELL (2016)
Plant metabolic clusters - from genetics to genomics
Hans-Wilhelm Nutzmann et al.
NEW PHYTOLOGIST (2016)
Delineation of metabolic gene clusters in plant genomes by chromatin signatures
Nan Yu et al.
NUCLEIC ACIDS RESEARCH (2016)
Evolution of Gene Duplication in Plants
Nicholas Panchy et al.
PLANT PHYSIOLOGY (2016)
Evolutionary interplay between sister cytochrome P450 genes shapes plasticity in plant metabolism
Zhenhua Liu et al.
NATURE COMMUNICATIONS (2016)
The biosynthetic gene cluster for the cyanogenic glucoside dhurrin in Sorghum bicolor contains its co-expressed vacuolar MATE transporter
Behrooz Darbani et al.
SCIENTIFIC REPORTS (2016)
Metabolite-based genome-wide association studies in plants
Jie Luo
CURRENT OPINION IN PLANT BIOLOGY (2015)
The butterfly plant arms-race escalated by gene and genome duplications
Patrick P. Edger et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
The evolutionary paths towards complexity: a metabolic perspective
Jing-Ke Weng
NEW PHYTOLOGIST (2014)
Detecting and Locating Whole Genome Duplications on a Phylogeny: A Probabilistic Approach
Charles-Elie Rabier et al.
MOLECULAR BIOLOGY AND EVOLUTION (2014)
De novo assembly of soybean wild relatives for pan-genome analysis of diversity and agronomic traits
Ying-hui Li et al.
NATURE BIOTECHNOLOGY (2014)
Genomic Signatures of Specialized Metabolism in Plants
Lee Chae et al.
SCIENCE (2014)
Plant single-cell and single-cell-type metabolomics
Biswapriya B. Misra et al.
TRENDS IN PLANT SCIENCE (2014)
Whole Genome and Tandem Duplicate Retention Facilitated Glucosinolate Pathway Diversification in the Mustard Family
Johannes A. Hofberger et al.
GENOME BIOLOGY AND EVOLUTION (2013)
MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity
Yupeng Wang et al.
NUCLEIC ACIDS RESEARCH (2012)
Convergent Evolution in Plant Specialized Metabolism
Eran Pichersky et al.
ANNUAL REVIEW OF PLANT BIOLOGY, VOL 62 (2011)
Comparative genomics and evolutionary analyses of the O-methyltransferase gene family in Populus
Abdelali Barakat et al.
GENE (2011)
Ancestral polyploidy in seed plants and angiosperms
Yuannian Jiao et al.
NATURE (2011)
antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences
Marnix H. Medema et al.
NUCLEIC ACIDS RESEARCH (2011)
A P450-centric view of plant evolution
David Nelson et al.
PLANT JOURNAL (2011)
Formation of plant metabolic gene clusters within dynamic chromosomal regions
Ben Field et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
How and Why Chromosome Inversions Evolve
Mark Kirkpatrick
PLOS BIOLOGY (2010)
Metabolic diversification - Independent assembly of operon-like gene clusters in different plants
Ben Field et al.
SCIENCE (2008)
From waste products to ecochemicals: Fifty years research of plant secondary metabolism
Thomas Hartmann
PHYTOCHEMISTRY (2007)
Widespread genome duplications throughout the history of flowering plants
Liying Cui et al.
GENOME RESEARCH (2006)
Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae:: Implications for the microbial pan-genome
H Tettelin et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
The evolutionary dynamics of plant duplicate genes
RC Moore et al.
CURRENT OPINION IN PLANT BIOLOGY (2005)
Seeing double: gene duplication and diversification in plant secondary metabolism
D Ober
TRENDS IN PLANT SCIENCE (2005)
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
S Kaul et al.
NATURE (2000)
The evolutionary fate and consequences of duplicate genes
M Lynch et al.
SCIENCE (2000)