4.5 Article

ProbResist: a database for drug-resistant probiotic bacteria

Publisher

OXFORD UNIV PRESS
DOI: 10.1093/database/baac064

Keywords

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Funding

  1. Wenzhou-Kean University Student Partnering with Faculty (SpF) research program [SpF2021002, SpS2021029, WKU201920009]
  2. Wenzhou Municipal Key Lab for Applied Biomedical and Biopharmaceutical Informatics [WB20211227000125]
  3. Zhejiang Bioinformatics International Science and Technology Cooperation Center [WB20210429000008]

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Drug resistance is a global threat, and the consumption of probiotic-containing foods with antibiotic resistant determinants raises health concerns. The lack of specific information about drug-resistant probiotics hampers efforts to combat drug resistance. Therefore, ProbResist, an online database, has been developed to provide quick access to information about drug resistance in probiotics for medical practitioners and policy makers.
Drug resistance remains a global threat, and the rising trend of consuming probiotic-containing foods, many of which harbor antibiotic resistant determinants, has raised serious health concerns. Currently, the lack of accessibility to location-, drug- and species-specific information of drug-resistant probiotics has hampered efforts to combat the global spread of drug resistance. Here, we describe the development of ProbResist, which is a manually curated online database that catalogs reports of probiotic bacteria that have been experimentally proven to be resistant to antibiotics. ProbResist allows users to search for information of drug resistance in probiotics by querying with the names of the bacteria, antibiotic or location. Retrieved results are presented in a downloadable table format containing the names of the antibiotic, probiotic species, resistant determinants, region where the study was conducted and digital article identifiers (PubMed Identifier and Digital Object Identifier) hyperlinked to the original sources. The webserver also presents a simple analysis of information stored in the database. Given the increasing reports of drug-resistant probiotics, an exclusive database is necessary to catalog them in one platform. It will enable medical practitioners and experts involved in policy making to access this information quickly and conveniently, thus contributing toward the broader goal of combating drug resistance.

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