Related references
Note: Only part of the references are listed.WheatOmics: A platform combining multiple omics data to accelerate functional genomics studies in wheat
Shengwei Ma et al.
MOLECULAR PLANT (2021)
WheatGmap: a comprehensive platform for wheat gene mapping and genomic studies
Lichao Zhang et al.
MOLECULAR PLANT (2021)
Bulked segregant CGT-Seq-facilitated map-based cloning of a powdery mildew resistance gene originating from wild emmer wheat (Triticum dicoccoides)
Qiuhong Wu et al.
PLANT BIOTECHNOLOGY JOURNAL (2021)
Genetic and molecular characterization of determinant of six-rowed spike of barley carrying vrs1.a4
Jin-Hui Wang et al.
THEORETICAL AND APPLIED GENETICS (2021)
Combining a New Exome Capture Panel With an Effective varBScore Algorithm Accelerates BSA-Based Gene Cloning in Wheat
Chunhao Dong et al.
FRONTIERS IN PLANT SCIENCE (2020)
SnpHub: an easy-to-set-up web server framework for exploring large-scale genomic variation data in the post-genomic era with applications in wheat
Wenxi Wang et al.
GIGASCIENCE (2020)
A Collinearity-Incorporating Homology Inference Strategy for Connecting Emerging Assemblies in the Triticeae Tribe as a Pilot Practice in the Plant Pangenomic Era
Yongming Chen et al.
MOLECULAR PLANT (2020)
Triticum population sequencing provides insights into wheat adaptation
Yao Zhou et al.
NATURE GENETICS (2020)
Multiple wheat genomes reveal global variation in modern breeding
Sean Walkowiak et al.
NATURE (2020)
Exome sequencing highlights the role of wild-relative introgression in shaping the adaptive landscape of the wheat genome
Fei He et al.
NATURE GENETICS (2019)
trackViewer: a Bioconductor package for interactive and integrative visualization of multi-omics data
Jianhong Ou et al.
NATURE METHODS (2019)
The EMBL-EBI search and sequence analysis tools APIs in 2019
Fabio Madeira et al.
NUCLEIC ACIDS RESEARCH (2019)
eGPS 1.0: comprehensive software for multi-omic and evolutionary analyses
Dalang Yu et al.
NATIONAL SCIENCE REVIEW (2019)
rnaSPAdes: a de novo transcriptome assembler and its application to RNA-Seq data
Elena Bushmanova et al.
GIGASCIENCE (2019)
OrthoFinder: phylogenetic orthology inference for comparative genomics
David M. Emms et al.
GENOME BIOLOGY (2019)
Frequent intra- and inter-species introgression shapes the landscape of genetic variation in bread wheat
Hong Cheng et al.
GENOME BIOLOGY (2019)
Mapping causal mutations by exome sequencing in a wheat TILLING population: a tall mutant case study
Youngjun Mo et al.
MOLECULAR GENETICS AND GENOMICS (2018)
The NB-LRR gene Pm60 confers powdery mildew resistance in wheat
Shenghao Zou et al.
NEW PHYTOLOGIST (2018)
Minimap2: pairwise alignment for nucleotide sequences
Heng Li
BIOINFORMATICS (2018)
fastp: an ultra-fast all-in-one FASTQ preprocessor
Shifu Chen et al.
BIOINFORMATICS (2018)
GIGGLE: a search engine for large-scale integrated genome analysis
Ryan M. Layer et al.
NATURE METHODS (2018)
Bioconda: sustainable and comprehensive software distribution for the life sciences
Bjoern Gruening et al.
NATURE METHODS (2018)
CGT-seq: epigenome-guided de novo assembly of the core genome for divergent populations with large genome
Meifang Qi et al.
NUCLEIC ACIDS RESEARCH (2018)
QTLseqr: An R Package for Bulk Segregant Analysis with Next-Generation Sequencing
Ben N. Mansfeld et al.
PLANT GENOME (2018)
Quantitative integration of epigenomic variation and transcription factor binding using MAmotif toolkit identifies an important role of IRF2 as transcription activator at gene promoters
Hongduo Sun et al.
CELL DISCOVERY (2018)
Impact of transposable elements on genome structure and evolution in bread wheat
Thomas Wicker et al.
GENOME BIOLOGY (2018)
GGTREE: an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data
Guangchuang Yu et al.
METHODS IN ECOLOGY AND EVOLUTION (2017)
ABySS 2.0: resource-efficient assembly of large genomes using a Bloom filter
Shaun D. Jackman et al.
GENOME RESEARCH (2017)
Fast Genome-Wide Functional Annotation through Orthology Assignment by eggNOG-Mapper
Jaime Huerta-Cepas et al.
MOLECULAR BIOLOGY AND EVOLUTION (2017)
Bulked sample analysis in genetics, genomics and crop improvement
Cheng Zou et al.
PLANT BIOTECHNOLOGY JOURNAL (2016)
SeqKit: A Cross-Platform and Ultrafast Toolkit for FASTA/Q File Manipulation
Wei Shen et al.
PLOS ONE (2016)
JBrowse: a dynamic web platform for genome visualization and analysis
Robert Buels et al.
GENOME BIOLOGY (2016)
STAR: ultrafast universal RNA-seq aligner
Alexander Dobin et al.
BIOINFORMATICS (2013)
Rapid identification of kidney cyst mutations by whole exome sequencing in zebrafish
Sean Ryan et al.
DEVELOPMENT (2013)
RNA-seq-based mapping and candidate identification of mutations from forward genetic screens
Adam C. Miller et al.
GENOME RESEARCH (2013)
MMAPPR: Mutation Mapping Analysis Pipeline for Pooled RNA-seq
Jonathon T. Hill et al.
GENOME RESEARCH (2013)
MutMap-Gap: whole-genome resequencing of mutant F2 progeny bulk combined with de novo assembly of gap regions identifies the rice blast resistance gene Pii
Hiroki Takagi et al.
NEW PHYTOLOGIST (2013)
QTL-seq: rapid mapping of quantitative trait loci in rice by whole genome resequencing of DNA from two bulked populations
Hiroki Takagi et al.
PLANT JOURNAL (2013)
MutMap plus : Genetic Mapping and Mutant Identification without Crossing in Rice
Rym Fekih et al.
PLOS ONE (2013)
BEDOPS: high-performance genomic feature operations
Shane Neph et al.
BIOINFORMATICS (2012)
Snakemake-a scalable bioinformatics workflow engine
Johannes Koester et al.
BIOINFORMATICS (2012)
Genome Evolution Due to Allopolyploidization in Wheat
Moshe Feldman et al.
GENETICS (2012)
Genome sequencing reveals agronomically important loci in rice using MutMap
Akira Abe et al.
NATURE BIOTECHNOLOGY (2012)
BEDTools: a flexible suite of utilities for comparing genomic features
Aaron R. Quinlan et al.
BIOINFORMATICS (2010)
ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data
Kai Wang et al.
NUCLEIC ACIDS RESEARCH (2010)
Fast and accurate short read alignment with Burrows-Wheeler transform
Heng Li et al.
BIOINFORMATICS (2009)
Perspective - Synteny and collinearity in plant genomes
Haibao Tang et al.
SCIENCE (2008)
Model-based Analysis of ChIP-Seq (MACS)
Yong Zhang et al.
GENOME BIOLOGY (2008)