4.8 Article

A simple solution to the problem of self-assembling cubic diamond crystals

Journal

NANOSCALE
Volume 14, Issue 38, Pages 14268-14275

Publisher

ROYAL SOC CHEMISTRY
DOI: 10.1039/d2nr03533b

Keywords

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Funding

  1. European Research Council [DLV-759187]
  2. ONR [N000142012094]
  3. Universita Ca' Foscari
  4. NSF [1931487 - ERC DLV-759187]
  5. National Science Foundation [TG-BIO210009]
  6. U.S. Department of Defense (DOD) [N000142012094] Funding Source: U.S. Department of Defense (DOD)

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In this study, we address the problems faced during the self-assembly of colloidal diamond crystals by using the SAT-assembly design framework. We demonstrate that the assembly of CD crystals only requires a binary mixture, and we test a promising DNA nanotechnology design using molecular dynamics simulations.
The self-assembly of colloidal diamond (CD) crystals is considered as one of the most coveted goals of nanotechnology, both from the technological and fundamental points of view. For applications, colloidal diamond is a photonic crystal which can open new possibilities of manipulating light for information processing. From a fundamental point of view, its unique symmetry exacerbates a series of problems that are commonly faced during the self-assembly of target structures, such as the presence of kinetic traps and the formation of crystalline defects and alternative structures (polymorphs). Here we demonstrate that all these problems can be systematically addressed via SAT-assembly, a design framework that converts self-assembly into a Boolean satisfiability problem (SAT). Contrary to previous solutions (requiring four or more components), we prove that the assembly of the CD crystal only requires a binary mixture. Moreover, we use molecular dynamics simulations of a system composed by nearly a million nucleotides to test a DNA nanotechnology design that constitutes a promising candidate for experimental realization.

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