4.6 Article

Towards quantitative viromics for both double-stranded and single-stranded DNA viruses

Related references

Note: Only part of the references are listed.
Article Infectious Diseases

Diverse circular replication-associated protein encoding viruses circulating in invertebrates within a lake ecosystem

Anisha Dayaram et al.

INFECTION GENETICS AND EVOLUTION (2016)

Article Microbiology

A new view of the tree of life

Laura A. Hug et al.

NATURE MICROBIOLOGY (2016)

Article History & Philosophy Of Science

The ecological virus

Maureen A. O'Malley

STUDIES IN HISTORY AND PHILOSOPHY OF SCIENCE PART C-STUDIES IN HISTORY AND PHILOSOPHY OF BIOLOGICAL AND BIOMEDIAL SCIENCES (2016)

Article Biotechnology & Applied Microbiology

An Inexpensive, Accurate, and Precise Wet-Mount Method for Enumerating Aquatic Viruses

Brady R. Cunningham et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2015)

Article Ecology

Water column stratification structures viral community composition in the Sargasso Sea

Dawn B. Goldsmith et al.

AQUATIC MICROBIAL ECOLOGY (2015)

Article Multidisciplinary Sciences

Unusual biology across a group comprising more than 15% of domain Bacteria

Christopher T. Brown et al.

NATURE (2015)

Review Microbiology

Rising to the challenge: accelerated pace of discovery transforms marine virology

Jennifer R. Brum et al.

NATURE REVIEWS MICROBIOLOGY (2015)

Article Microbiology

Diversity and comparative genomics of Microviridae in Sphagnum-dominated peatlands

Achim Quaiser et al.

FRONTIERS IN MICROBIOLOGY (2015)

Article Multidisciplinary Sciences

VirSorter: mining viral signal from microbial genomic data

Simon Roux et al.

PEERJ (2015)

Article Multidisciplinary Sciences

Open science resources for the discovery and analysis of Tara Oceans data

Stephane Pesant et al.

SCIENTIFIC DATA (2015)

Article Biotechnology & Applied Microbiology

Discovery of Two Novel Viruses Expands the Diversity of Single-Stranded DNA and Single-Stranded RNA Viruses Infecting a Cosmopolitan Marine Diatom

Kei Kimura et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2015)

Article Biochemical Research Methods

Trimmomatic: a flexible trimmer for Illumina sequence data

Anthony M. Bolger et al.

BIOINFORMATICS (2014)

Article Infectious Diseases

Diverse small circular single-stranded DNA viruses identified in a freshwater pond on the McMurdo Ice Shelf (Antarctica)

Peyman Zawar-Reza et al.

INFECTION GENETICS AND EVOLUTION (2014)

Article Ecology

Previously unknown and highly divergent ssDNA viruses populate the oceans

Jessica M. Labonte et al.

ISME JOURNAL (2013)

Article Multidisciplinary Sciences

Insights into the phylogeny and coding potential of microbial dark matter

Christian Rinke et al.

NATURE (2013)

Review Microbiology

The gut microbiota - masters of host development and physiology

Felix Sommer et al.

NATURE REVIEWS MICROBIOLOGY (2013)

Article Multidisciplinary Sciences

Twelve previously unknown phage genera are ubiquitous in global oceans

Karin Holmfeldt et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)

Article Multidisciplinary Sciences

Extraordinary phylogenetic diversity and metabolic versatility in aquifer sediment

Cindy J. Castelle et al.

NATURE COMMUNICATIONS (2013)

Article Biotechnology & Applied Microbiology

Cultivated Single-Stranded DNA Phages That Infect Marine Bacteroidetes Prove Difficult To Detect with DNA-Binding Stains

Karin Holmfeldt et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2012)

Article Ecology

First evidence for the existence of pennate diatom viruses

Yuji Tomaru et al.

ISME JOURNAL (2012)

Article Biochemical Research Methods

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

Anton Bankevich et al.

JOURNAL OF COMPUTATIONAL BIOLOGY (2012)

Article Biotechnology & Applied Microbiology

Diverse circular ssDNA viruses discovered in dragonflies (Odonata: Epiprocta)

Karyna Rosario et al.

JOURNAL OF GENERAL VIROLOGY (2012)

Article Biochemical Research Methods

Fast gapped-read alignment with Bowtie 2

Ben Langmead et al.

NATURE METHODS (2012)

Article Multidisciplinary Sciences

Archaeal virus with exceptional virion architecture and the largest single-stranded DNA genome

Tomohiro Mochizuki et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Article Multidisciplinary Sciences

Fermentation, Hydrogen, and Sulfur Metabolism in Multiple Uncultivated Bacterial Phyla

Kelly C. Wrighton et al.

SCIENCE (2012)

Article Virology

Metagenomics and future perspectives in virus discovery

John L. Mokili et al.

CURRENT OPINION IN VIROLOGY (2012)

Article Biotechnology & Applied Microbiology

Diversity and Abundance of Single-Stranded DNA Viruses in Human Feces

Min-Soo Kim et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2011)

Article Biotechnology & Applied Microbiology

Amplification Methods Bias Metagenomic Libraries of Uncultured Single-Stranded and Double-Stranded DNA Viruses

Kyoung-Ho Kim et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2011)

Article Ecology

Ecogenomics and genome landscapes of marine Pseudoalteromonas phage H105/1

Melissa Beth Duhaime et al.

ISME JOURNAL (2011)

Article Biotechnology & Applied Microbiology

Genetic diversity of novel circular ssDNA viruses in bats in China

Xingyi Ge et al.

JOURNAL OF GENERAL VIROLOGY (2011)

Article Environmental Sciences

A simple and efficient method for concentration of ocean viruses by chemical flocculation

Seth G. John et al.

ENVIRONMENTAL MICROBIOLOGY REPORTS (2011)

Letter Biochemical Research Methods

Multiple displacement amplification compromises quantitative analysis of metagenomes

Suzan Yilmaz et al.

NATURE METHODS (2010)

Article Evolutionary Biology

Geminiviruses: a tale of a plasmid becoming a virus

Mart Krupovic et al.

BMC EVOLUTIONARY BIOLOGY (2009)

Article Microbiology

Metagenomic analysis of viruses in reclaimed water

Karyna Rosario et al.

ENVIRONMENTAL MICROBIOLOGY (2009)

Article Biotechnology & Applied Microbiology

Diverse circovirus-like genome architectures revealed by environmental metagenomics

Karyna Rosario et al.

JOURNAL OF GENERAL VIROLOGY (2009)

Review Multidisciplinary Sciences

Viruses manipulate the marine environment

Forest Rohwer et al.

NATURE (2009)

Article Multidisciplinary Sciences

High Diversity of the Viral Community from an Antarctic Lake

Alberto Lopez-Bueno et al.

SCIENCE (2009)

Article Biochemical Research Methods

The GAAS Metagenomic Tool and Its Estimations of Viral and Microbial Average Genome Size in Four Major Biomes

Florent E. Angly et al.

PLOS COMPUTATIONAL BIOLOGY (2009)

Article Biotechnology & Applied Microbiology

Amplification of uncultured single-stranded DNA viruses from rice paddy soil

Kyoung-Ho Kim et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2008)

Review Multidisciplinary Sciences

The microbial engines that drive Earth's biogeochemical cycles

Paul G. Falkowski et al.

SCIENCE (2008)

Article Microbiology

Metagenomic analysis of the microbial community associated with the coral Porites astreoides

Linda Wegley et al.

ENVIRONMENTAL MICROBIOLOGY (2007)

Review Microbiology

Marine viruses - major players in the global ecosystem

Curtis A. Suttle

NATURE REVIEWS MICROBIOLOGY (2007)

Article Biochemistry & Molecular Biology

The marine viromes of four oceanic regions

Florent E. Angly et al.

PLOS BIOLOGY (2006)

Article Microbiology

Horizontal gene transfer and the evolution of microvirid coliphage genomes

DR Rokyta et al.

JOURNAL OF BACTERIOLOGY (2006)

Review Biotechnology & Applied Microbiology

Enumeration of viruses

RT Noble

METHODS IN MICROBIOLOGY, VOL 30 (2001)