Related references
Note: Only part of the references are listed.Ultralong Oxford Nanopore Reads Enable the Development of a Reference-Grade Perennial Ryegrass Genome Assembly
Daniel Frei et al.
GENOME BIOLOGY AND EVOLUTION (2021)
Identifying and removing haplotypic duplication in primary genome assemblies
Dengfeng Guan et al.
BIOINFORMATICS (2020)
IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era
Bui Quang Minh et al.
MOLECULAR BIOLOGY AND EVOLUTION (2020)
RepeatModeler2 for automated genomic discovery of transposable element families
Jullien M. Flynn et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)
metaFlye: scalable long-read metagenome assembly using repeat graphs
Mikhail Kolmogorov et al.
NATURE METHODS (2020)
PANTHER version 14: more genomes, a new PANTHER GO-slim and improvements in enrichment analysis tools
Huaiyu Mi et al.
NUCLEIC ACIDS RESEARCH (2019)
UniProt: a worldwide hub of protein knowledge
Alex Bateman et al.
NUCLEIC ACIDS RESEARCH (2019)
OrthoFinder: phylogenetic orthology inference for comparative genomics
David M. Emms et al.
GENOME BIOLOGY (2019)
Performance of neural network basecalling tools for Oxford Nanopore sequencing
Ryan R. Wick et al.
GENOME BIOLOGY (2019)
Assembly of allele-aware, chromosomal-scale autopolyploid genomes based on Hi-C data
Xingtan Zhang et al.
NATURE PLANTS (2019)
Assessing genome assembly quality using the LTR Assembly Index (LAI)
Shujun Ou et al.
NUCLEIC ACIDS RESEARCH (2018)
Current Strategies of Polyploid Plant Genome Sequence Assembly
Maria Kyriakidou et al.
FRONTIERS IN PLANT SCIENCE (2018)
Fast and accurate de novo genome assembly from long uncorrected reads
Robert Vaser et al.
GENOME RESEARCH (2017)
Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation
Sergey Koren et al.
GENOME RESEARCH (2017)
ModelFinder: fast model selection for accurate phylogenetic estimates
Subha Kalyaanamoorthy et al.
NATURE METHODS (2017)
Population structure and genetic basis of the agronomic traits of upland cotton in China revealed by a genome-wide association study using high-density SNPs
Cong Huang et al.
PLANT BIOTECHNOLOGY JOURNAL (2017)
De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds
Olga Dudchenko et al.
SCIENCE (2017)
Compacting and correcting Trinity and Oases RNA - Seq de novo assemblies
Cedric Cabau et al.
PEERJ (2017)
Completing bacterial genome assemblies with multiplex MinION sequencing
Ryan R. Wick et al.
MICROBIAL GENOMICS (2017)
GenomeScope: fast reference-free genome profiling from short reads
Gregory W. Vurture et al.
BIOINFORMATICS (2017)
Evolution of Gene Duplication in Plants
Nicholas Panchy et al.
PLANT PHYSIOLOGY (2016)
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
Felipe A. Simao et al.
BIOINFORMATICS (2015)
A synteny-based draft genome sequence of the forage grass Lolium perenne
Stephen L. Byrne et al.
PLANT JOURNAL (2015)
Rcorrector: efficient and accurate error correction for Illumina RNA-seq reads
Li Song et al.
GIGASCIENCE (2015)
Whole-genome sequencing of cultivated and wild peppers provides insights into Capsicum domestication and specialization
Cheng Qin et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
The MaSuRCA genome assembler
Aleksey V. Zimin et al.
BIOINFORMATICS (2013)
GenomeTools: A Comprehensive Software Library for Efficient Processing of Structured Genome Annotations
Gordon Gremme et al.
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS (2013)
De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis
Brian J. Haas et al.
NATURE PROTOCOLS (2013)
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
Christian Quast et al.
NUCLEIC ACIDS RESEARCH (2013)
Challenges in homology search: HMMER3 and convergent evolution of coiled-coil regions
Jaina Mistry et al.
NUCLEIC ACIDS RESEARCH (2013)
Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels
Marcel H. Schulz et al.
BIOINFORMATICS (2012)
Fast gapped-read alignment with Bowtie 2
Ben Langmead et al.
NATURE METHODS (2012)
Understanding Lolium rigidum Seeds: The Key to Managing a Problem Weed?
Danica E. Goggin et al.
AGRONOMY-BASEL (2012)
A fast, lock-free approach for efficient parallel counting of occurrences of k-mers
Guillaume Marcais et al.
BIOINFORMATICS (2011)
MACSE: Multiple Alignment of Coding SEquences Accounting for Frameshifts and Stop Codons
Vincent Ranwez et al.
PLOS ONE (2011)
γ-MYN: a new algorithm for estimating Ka and Ks with consideration of variable substitution rates
Da-Peng Wang et al.
BIOLOGY DIRECT (2009)
CAFE: a computational tool for the study of gene family evolution
T De Bie et al.
BIOINFORMATICS (2006)
Share Paper
