3.8 Proceedings Paper

Identifying Structural Properties of Proteins from X-ray Free Electron Laser Diffraction Patterns

Related references

Note: Only part of the references are listed.
Article Computer Science, Theory & Methods

Building High-Throughput Neural Architecture Search Workflows via a Decoupled Fitness Prediction Engine

Ariel Keller Rorabaugh et al.

Summary: Neural architecture search (NAS) is an automated method for designing neural networks, but it requires significant computational power. To address efficiency and scalability challenges, we propose PENGUIN, a decoupled fitness prediction engine that uses parametric modeling to predict the fitness of neural networks. This approach reduces training costs and time.

IEEE TRANSACTIONS ON PARALLEL AND DISTRIBUTED SYSTEMS (2022)

Article Biochemistry & Molecular Biology

Effect of Dataset Size and Train/Test Split Ratios in QSAR/QSPR Multiclass Classification

Anita Racz et al.

Summary: The size of datasets, train/test split ratios, and choice of machine learning algorithms can all impact the performance of classification models. XGBoost algorithm excels in multiclass modeling, and some performance parameters are more sensitive to changes in dataset size.

MOLECULES (2021)

Proceedings Paper Computer Science, Artificial Intelligence

NSGA-Net: Neural Architecture Search using Multi-Objective Genetic Algorithm

Zhichao Lu et al.

PROCEEDINGS OF THE 2019 GENETIC AND EVOLUTIONARY COMPUTATION CONFERENCE (GECCO'19) (2019)

Article Instruments & Instrumentation

Three-dimensional reconstruction for coherent diffraction patterns obtained by XFEL

Miki Nakano et al.

JOURNAL OF SYNCHROTRON RADIATION (2017)

Article Biochemistry & Molecular Biology

Xmipp 3.0: An improved software suite for image processing in electron microscopy

J. M. de la Rosa-Trevin et al.

JOURNAL OF STRUCTURAL BIOLOGY (2013)

Article Multidisciplinary Sciences

Control of Ribosomal Subunit Rotation by Elongation Factor G

Arto Pulk et al.

SCIENCE (2013)

Article Biochemistry & Molecular Biology

Atomic structure of a single large biomolecule from diffraction patterns of random orientations

Miklos Tegze et al.

JOURNAL OF STRUCTURAL BIOLOGY (2012)

Article Physics, Fluids & Plasmas

Reconstruction algorithm for single-particle diffraction imaging experiments

Ne-Te Duane Loh et al.

PHYSICAL REVIEW E (2009)

Article Biochemistry & Molecular Biology

Common conventions for interchange and archiving of three-dimensional electron microscopy information in structural biology

JB Heymann et al.

JOURNAL OF STRUCTURAL BIOLOGY (2005)

Article Multidisciplinary Sciences

Nonlinear elasticity, proteinquakes, and the energy landscapes of functional transitions in proteins

O Miyashita et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)

Article Biochemistry & Molecular Biology

Two crystal structures demonstrate large conformational changes in the eukaryotic ribosomal translocase

R Jorgensen et al.

NATURE STRUCTURAL BIOLOGY (2003)

Article Computer Science, Artificial Intelligence

Random forests

L Breiman

MACHINE LEARNING (2001)

Article Biochemistry & Molecular Biology

The Protein Data Bank

HM Berman et al.

NUCLEIC ACIDS RESEARCH (2000)