Related references
Note: Only part of the references are listed.RCSB Protein Data Bank: Efficient Searching and Simultaneous Access to One Million Computed Structure Models Alongside the PDB Structures Enabled by Architectural Advances
Sebastian Bittrich et al.
JOURNAL OF MOLECULAR BIOLOGY (2023)
OrthoDB v11: annotation of orthologs in the widest sampling of organismal diversity
Dmitry Kuznetsov et al.
NUCLEIC ACIDS RESEARCH (2023)
The STRING database in 2023: protein-protein association networks and functional enrichment analyses for any sequenced genome of interest
Damian Szklarczyk et al.
NUCLEIC ACIDS RESEARCH (2023)
EMBL's European Bioinformatics Institute (EMBL-EBI) in 2022
Matthew Thakur et al.
NUCLEIC ACIDS RESEARCH (2023)
UniProt: the Universal Protein Knowledgebase in 2023
Alex Bateman et al.
NUCLEIC ACIDS RESEARCH (2023)
DECIPHER: Improving Genetic Diagnosis Through Dynamic Integration of Genomic and Clinical Data
Julia Foreman et al.
ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS (2023)
Integrating massive RNA-seq data to elucidate transcriptome dynamics in Drosophila melanogaster
Sheng Hu Qian et al.
BRIEFINGS IN BIOINFORMATICS (2023)
PubChem 2023 update
Sunghwan Kim et al.
NUCLEIC ACIDS RESEARCH (2023)
Fast and accurate protein structure search with Foldseek
Michel van Kempen et al.
NATURE BIOTECHNOLOGY (2023)
Evolutionary-scale prediction of atomic-level protein structure with a language model
Zeming Lin et al.
SCIENCE (2023)
Next-generation large-scale binary protein interaction network for Drosophila melanogaster
Hong-Wen Tang et al.
NATURE COMMUNICATIONS (2023)
Functional unknomics: Systematic screening of conserved genes of unknown function
Joao J. D. Rocha et al.
PLOS BIOLOGY (2023)
SignalP 6.0 predicts all five types of signal peptides using protein language models
Felix Teufel et al.
NATURE BIOTECHNOLOGY (2022)
Complex Portal 2022: new curation frontiers
Birgit H. M. Meldal et al.
NUCLEIC ACIDS RESEARCH (2022)
PANTHER: Making genome-scale phylogenetics accessible to all
Paul D. Thomas et al.
PROTEIN SCIENCE (2022)
ModelMatcher: A scientist-centric online platform to facilitate collaborations between stakeholders of rare and undiagnosed disease research
J. Michael Harnish et al.
HUMAN MUTATION (2022)
ColabFold: making protein folding accessible to all
Milot Mirdita et al.
NATURE METHODS (2022)
DeepLoc 2.0: multi-label subcellular localization prediction using protein language models
Vineet Thumuluri et al.
NUCLEIC ACIDS RESEARCH (2022)
Fly Cell Atlas: A single-nucleus transcriptomic atlas of the adult fruit fly
Hongjie Li et al.
SCIENCE (2022)
FlyBase: a guided tour of highlighted features
L. Sian Gramates et al.
GENETICS (2022)
VectorBase.org updates: bioinformatic resources for invertebrate vectors of human pathogens and related organisms
Gloria Giraldo-Calderon et al.
CURRENT OPINION IN INSECT SCIENCE (2022)
An expanded toolkit for Drosophila gene tagging using synthesized homology donor constructs for CRISPR-mediated homologous recombination
Oguz Kanca et al.
ELIFE (2022)
REDfly: An Integrated Knowledgebase for Insect Regulatory Genomics
Soile V. E. Keranen et al.
INSECTS (2022)
Paralog Explorer: A resource for mining information about paralogs in common research organisms
Yanhui Hu et al.
COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL (2022)
FlyRNAi.org-the database of the Drosophila RNAi screening center and transgenic RNAi project: 2021 update
Yanhui Hu et al.
NUCLEIC ACIDS RESEARCH (2021)
FlyBase: updates to the Drosophila melanogaster knowledge base
Aoife Larkin et al.
NUCLEIC ACIDS RESEARCH (2021)
Methods and tools for spatial mapping of single-cell RNAseq clusters in Drosophila
Stephanie E. Mohr et al.
GENETICS (2021)
Bioinformatic and cell-based tools for pooled CRISPR knockout screening in mosquitos
Raghuvir Viswanatha et al.
NATURE COMMUNICATIONS (2021)
Highly accurate protein structure prediction with AlphaFold
John Jumper et al.
NATURE (2021)
Accurate prediction of protein structures and interactions using a three-track neural network
Minkyung Baek et al.
SCIENCE (2021)
Alliance of Genome Resources Portal: unified model organism research platform
Julie Agapite et al.
NUCLEIC ACIDS RESEARCH (2020)
ClinVar: improvements to accessing data
Melissa J. Landrum et al.
NUCLEIC ACIDS RESEARCH (2020)
The Monarch Initiative in 2019: an integrative data and analytic platform connecting phenotypes to genotypes across species
Kent A. Shefchek et al.
NUCLEIC ACIDS RESEARCH (2020)
BioLitMine: Advanced Mining of Biomedical and Biological Literature About Human Genes and Genes from Major Model Organisms
Yanhui Hu et al.
G3-GENES GENOMES GENETICS (2020)
Navigating MARRVEL, a Web-Based Tool that Integrates Human Genomics and Model Organism Genetics Information
Julia Wang et al.
JOVE-JOURNAL OF VISUALIZED EXPERIMENTS (2019)
An efficient CRISPR-based strategy to insert small and large fragments of DNA using short homology arms
Oguz Kanca et al.
eLife (2019)
Human Disease Ontology 2018 update: classification, content and workflow expansion
Lynn M. Schriml et al.
NUCLEIC ACIDS RESEARCH (2019)
OMIM.org: leveraging knowledge across phenotype-gene relationships
Joanna S. Amberger et al.
NUCLEIC ACIDS RESEARCH (2019)
The BioGRID interaction database: 2019 update
Rose Oughtred et al.
NUCLEIC ACIDS RESEARCH (2019)
FlyBase 2.0: the next generation
Jim Thurmond et al.
NUCLEIC ACIDS RESEARCH (2019)
iProteinDB: An Integrative Database of Drosophila Post-translational Modifications
Yanhui Hu et al.
G3-GENES GENOMES GENETICS (2019)
Molecular Interaction Search Tool (MIST): an integrated resource for mining gene and protein interaction data
Yanhui Hu et al.
NUCLEIC ACIDS RESEARCH (2018)
FlyAtlas 2: a new version of the Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data
David P. Leader et al.
NUCLEIC ACIDS RESEARCH (2018)
DrugBank 5.0: a major update to the DrugBank database for 2018
David S. Wishart et al.
NUCLEIC ACIDS RESEARCH (2018)
GeneMANIA update 2018
Max Franz et al.
NUCLEIC ACIDS RESEARCH (2018)
Pooled genome-wide CRISPR screening for basal and context-specific fitness gene essentiality in Drosophila cells
Raghuvir Viswanatha et al.
ELIFE (2018)
The developmental proteome of Drosophila melanogaster
Nuria Casas-Vila et al.
GENOME RESEARCH (2017)
FlyExpress 7: An Integrated Discovery Platform To Study Coexpressed Genes Using in Situ Hybridization Images in Drosophila
Sudhir Kumar et al.
G3-GENES GENOMES GENETICS (2017)
Gene2Function: An Integrated Online Resource for Gene Function Discovery
Yanhui Hu et al.
G3-GENES GENOMES GENETICS (2017)
PubChem BioAssay: A Decade's Development toward Open High-Throughput Screening Data Sharing
Yanli Wang et al.
SLAS DISCOVERY (2017)
MARRVEL: Integration of Human and Model Organism Genetic Resources to Facilitate Functional Annotation of the Human Genome
Julia Wang et al.
AMERICAN JOURNAL OF HUMAN GENETICS (2017)
The Drosophila Gene Expression Tool (DGET) for expression analyses
Yanhui Hu et al.
BMC BIOINFORMATICS (2017)
FlyBase: establishing a Gene Group resource for Drosophila melanogaster
Helen Attrill et al.
NUCLEIC ACIDS RESEARCH (2016)
FlyBase portals to human disease research using Drosophila models
Gillian H. Millburn et al.
DISEASE MODELS & MECHANISMS (2016)
Diverse and pervasive subcellular distributions for both coding and long noncoding RNAs
Ronit Wilk et al.
GENES & DEVELOPMENT (2016)
JBrowse: a dynamic web platform for genome visualization and analysis
Robert Buels et al.
GENOME BIOLOGY (2016)
Endogenously Tagged Rab Proteins: A Resource to Study Membrane Trafficking in Drosophila
Sebastian Dunst et al.
DEVELOPMENTAL CELL (2015)
Genetics on the Fly: A Primer on the Drosophila Model System
Karen G. Hales et al.
GENETICS (2015)
The Transgenic RNAi Project at Harvard Medical School: Resources and Validation
Lizabeth A. Perkins et al.
GENETICS (2015)
Systematic imaging reveals features and changing localization of mRNAs in Drosophila development
Helena Jambor et al.
ELIFE (2015)
A library of MiMICs allows tagging of genes and reversible, spatial and temporal knockdown of proteins in Drosophila
Sonal Nagarkar-Jaiswal et al.
ELIFE (2015)
A genetic toolkit for tagging intronic MiMIC containing genes
Sonal Nagarkar-Jaiswal et al.
ELIFE (2015)
The complex portal - an encyclopaedia of macromolecular complexes
Birgit H. M. Meldal et al.
NUCLEIC ACIDS RESEARCH (2015)
OMIM.org: Online Mendelian Inheritance in Man (OMIM®), an online catalog of human genes and genetic disorders
Joanna S. Amberger et al.
NUCLEIC ACIDS RESEARCH (2015)
Resources for Functional Genomics Studies in Drosophila melanogaster
Stephanie E. Mohr et al.
GENETICS (2014)
InterMine: extensive web services for modern biology
Alex Kalderimis et al.
NUCLEIC ACIDS RESEARCH (2014)
UP-TORR: Online Tool for Accurate and Up-to-Date Annotation of RNAi Reagents
Yanhui Hu et al.
GENETICS (2013)
GenomeRNAi: a database for cell-based and in vivo RNAi phenotypes, 2013 update
Esther E. Schmidt et al.
NUCLEIC ACIDS RESEARCH (2013)
Protein Complex-Based Analysis Framework for High-Throughput Data Sets
Arunachalam Vinayagam et al.
SCIENCE SIGNALING (2013)
Spatial expression of transcription factors in Drosophila embryonic organ development
Ann S. Hammonds et al.
GENOME BIOLOGY (2013)
The IntAct molecular interaction database in 2012
Samuel Kerrien et al.
NUCLEIC ACIDS RESEARCH (2012)
An integrative approach to ortholog prediction for disease-focused and other functional studies
Yanhui Hu et al.
BMC BIOINFORMATICS (2011)
A Protein Complex Network of Drosophila melanogaster
K. G. Guruharsha et al.
CELL (2011)
MiMIC: a highly versatile transposon insertion resource for engineering Drosophila melanogaster genes
Koen J. T. Venken et al.
NATURE METHODS (2011)
DroID 2011: a comprehensive, integrated resource for protein, transcription factor, RNA and gene interactions for Drosophila
Thilakam Murali et al.
NUCLEIC ACIDS RESEARCH (2011)
Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE
Sushmita Roy et al.
SCIENCE (2010)
QuickGO: a web-based tool for Gene Ontology searching
David Binns et al.
BIOINFORMATICS (2009)
DroID: the Drosophila Interactions Database, a comprehensive resource for annotated gene and protein interactions
Jingkai Yu et al.
BMC GENOMICS (2008)
Global analysis of mRNA localization reveals a prominent role in organizing cellular architecture and function
Eric Lecuyer et al.
CELL (2007)
Advantages of combined transmembrane topology and signal peptide prediction -: the Phobius web server
Lukas Kaell et al.
NUCLEIC ACIDS RESEARCH (2007)
NucPred - Predicting nuclear localization of proteins
Markus Brameier et al.
BIOINFORMATICS (2007)
Global analysis of patterns of gene expression during Drosophila embryogenesis
Pavel Tomancak et al.
GENOME BIOLOGY (2007)
FlyMine: an integrated database for Drosophila and Anopheles genomics
Rachel Lyne et al.
GENOME BIOLOGY (2007)
Prediction of proprotein convertase cleavage sites
P Duckert et al.
PROTEIN ENGINEERING DESIGN & SELECTION (2004)
A protein interaction map of Drosophila melanogaster
L Giot et al.
SCIENCE (2003)
OrthoMCL: Identification of ortholog groups for eukaryotic genomes
L Li et al.
GENOME RESEARCH (2003)
Cytoscape: A software environment for integrated models of biomolecular interaction networks
P Shannon et al.
GENOME RESEARCH (2003)
DIP: the Database of Interacting Proteins
I Xenarios et al.
NUCLEIC ACIDS RESEARCH (2000)
Share Paper
