Triblock Proteins with Weakly Dimerizing Terminal Blocks and an Intrinsically Disordered Region for Rational Design of Condensate Properties

Condensates are molecular assemblies that are formed through liquid-liquid phase separation and play important roles in many biological processes. The rational design of condensate formation and their properties is central to applications, such as biosynthetic materials, synthetic biology, and for understanding cell biology. Protein engineering is used to make a triblock structure with varying terminal blocks of folded proteins on both sides of an intrinsically disordered mid-region. Dissociation constants are determined in the range of micromolar to millimolar for a set of proteins suitable for use as terminal blocks. Varying the weak dimerization of terminal blocks leads to an adjustable tendency for condensate formation while keeping the intrinsically disordered region constant. The dissociation constants of the terminal domains correlate directly with the tendency to undergo liquid-liquid phase separation. Differences in physical properties, such as diffusion rate are not directly correlated with the strength of dimerization but can be understood from the properties and interplay of the constituent blocks. The work demonstrates the importance of weak interactions in condensate formation and shows a principle for protein design that will help in fabricating functional condensates in a predictable and rational way. The design of bimolecular condensates has wide applications in bioscience. A triblock approach for building proteins with tunable condensate properties is used. Properties such as the propensity to undergo phase separation, surface tension, and diffusivity of molecules can be controlled by the nature of the terminal blocks. A toolbox of terminal blocks is proposed that can widely be used for engineering condensates.image

Automated summary

This study demonstrates the importance of weak interactions in the formation of condensates and provides a principle for rational protein design. By using a triblock approach, the propensity for condensate formation can be controlled by varying the weak dimerization of terminal blocks. The dissociation constants of the terminal domains directly correlate with the tendency for liquid-liquid phase separation. Additionally, differences in physical properties can be understood from the properties and interplay of constituent blocks.