4.4 Article

Genome-wide identification and expression analysis of Na+/H+ antiporter (NHX) genes in tomato under salt stress

Related references

Note: Only part of the references are listed.
Article Agronomy

Gibberellic Acid and Indole Acetic Acid Improves Salt Tolerance in Transgenic Tomato Plants Overexpressing LeNHX4 Antiporter

Mourad Baghour et al.

Summary: Salinity is a major factor limiting plant growth and productivity. Exogenous plant hormones IAA and GA(3) can improve salt tolerance and increase fruit yield and quality in transgenic tomato plants, possibly by increasing the expression or activity of the LeNHX4 antiporter.

GESUNDE PFLANZEN (2023)

Article Plant Sciences

Genome-wide analysis of the Actinidia chinensis NHX family and characterization of the roles of AcNHX3 and AcNHX7 in regulating salt tolerance in Arabidopsis

Huayu Liu et al.

Summary: In this study, eight NHX family members were identified in the Actinidia chinensis genome and clustered into three groups based on phylogenetic analysis. Gene expression analysis revealed that AcNHXs show varied responses to salt stress. AcNHX3 and AcNHX7 were found to play a role in regulating salt tolerance in yeast and Arabidopsis, respectively.

ENVIRONMENTAL AND EXPERIMENTAL BOTANY (2023)

Article Biochemistry & Molecular Biology

Ensembl 2022

Fiona Cunningham et al.

Summary: Ensembl is unique in its flexible infrastructure for access to genomic data and annotation. They have focused on expediting annotation of new assemblies via the Ensembl Rapid Release platform, with the greatest annual number of newly annotated genomes released. They also developed a new method for comparative analyses and annotated non-vertebrate eukaryotes for the first time.

NUCLEIC ACIDS RESEARCH (2022)

Article Genetics & Heredity

NHX-Type Na+/H+ Antiporter Gene Expression Under Different Salt Levels and Allelic Diversity of HvNHX in Wild and Cultivated Barleys

Zahra Jabeen et al.

Summary: This study investigates the expression profile of HvNHX gene isoforms in wild and cultivated barley under salt stress and identifies candidate genes associated with ion regulation and distinctive alleles of HvNHX1 and HvNHX3 in Tibetan wild barley that confer salinity tolerance. The results show that XZ16 is a tolerant genotype with least reduction of root and leaf dry weight under salt stress. The findings provide insights into the genetic variation and mechanisms of salt tolerance in wild barley.

FRONTIERS IN GENETICS (2022)

Article Agronomy

Cation/Proton Antiporter Genes in Tomato: Genomic Characterization, Expression Profiling, and Co-Localization with Salt Stress-Related QTLs

Zahid Hussain et al.

Summary: This study identified and analyzed 33 putative CPA genes in tomato and found that they play a crucial role in maintaining ionic balance and pH homeostasis, promoting plant development, and responding to salt stress. Further analysis revealed the characteristics of CPA genes in terms of gene structure, distribution pattern, and co-localization. The diverse functions of these CPA genes provide comprehensive information for exploring new candidate genes for salt tolerance in tomato.

AGRONOMY-BASEL (2022)

Article Multidisciplinary Sciences

Genome-wide identification, molecular characterization, and gene expression analyses of honeysuckle NHX antiporters suggest their involvement in salt stress adaptation

Luyao Huang et al.

Summary: This study provides a theoretical foundation for further functional characterization of the NHX gene family in honeysuckle, and reveals the significant roles of LjNHXs in honeysuckle development and response to salt stresses.

PEERJ (2022)

Article Agronomy

Genome-Wide Identification of the NHX Gene Family in Punica granatum L. and Their Expressional Patterns under Salt Stress

Jianmei Dong et al.

Summary: This study identified 10 PgNHX genes in pomegranate and investigated their expression patterns under NaCl stress. The analysis of physicochemical properties, phylogenetic evolution, conserved motifs, gene structures, cis-acting elements, protein tertiary structure, and expression pattern of PgNHXs revealed their potential roles in maintaining Na+ balance under salt stress. Overall, the findings suggest that PgNHXs play significant roles in response to salt stress, laying the theoretical foundation for further functional characterization of the NHX gene family in pomegranate.

AGRONOMY-BASEL (2021)

Article Biochemistry & Molecular Biology

Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation

Ivica Letunic et al.

Summary: The Interactive Tree Of Life is an online tool for displaying, manipulating, and annotating phylogenetic and other trees. The latest version 5 introduces a new tree display engine and several new features, such as a new dataset type and expanded annotation options. Users can now also manually annotate trees by hand, providing more flexibility and control.

NUCLEIC ACIDS RESEARCH (2021)

Article Plant Sciences

Improved yield, fruit quality, and salt resistance in tomato co-overexpressing LeNHX2 and SlSOS2 genes

Mostapha Maach et al.

Summary: This study investigated the effects of LeNHX2 and SlSOS2 co-overexpression on fruit production and quality in tomato plants. The results showed that transgenic plants exhibited better salt tolerance with increased proline, glucose, and protein content in leaves. Additionally, under salt treatment, wild-type plants had reduced yield, pH, and TSS in fruits, while transgenic plants showed increased yield, pH, and TSS, especially those overexpressing both LeNHX2 and SlSOS2. Overall, co-overexpression of LeNHX2 and SlSOS2 improved yield and fruit quality of tomato plants grown under saline conditions.

PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS (2021)

Article Genetics & Heredity

Molecular Characterization and Expression Analysis of the Na+/H+ Exchanger Gene Family in Capsicum annuum L.

Xirong Luo et al.

Summary: This study systematically identified and analyzed the CaNHX gene family in pepper using bioinformatics methods, providing insights into gene structure, functional domains, conserved motifs, and expression characteristics under salt stress. The results indicate that CaNHX genes play a crucial role in stress resistance and growth development in pepper.

FRONTIERS IN GENETICS (2021)

Article Biochemistry & Molecular Biology

MEGA11 Molecular Evolutionary Genetics Analysis Version 11

Koichiro Tamura et al.

Summary: MEGA software, a mature tool for computational molecular evolution, has been enhanced with new additions for building timetrees of species, pathogens, and gene families using rapid relaxed-clock methods. These additions include methods for estimating divergence times, confidence intervals, and new options for tagging sequences with spatiotemporal sampling information. The enhancements aim to improve user experience, result quality, and the pace of biological discovery.

MOLECULAR BIOLOGY AND EVOLUTION (2021)

Review Plant Sciences

Salt Tolerance Mechanisms of Plants

Eva van Zelm et al.

ANNUAL REVIEW OF PLANT BIOLOGY, VOL 71, 2020 (2020)

Article Biochemistry & Molecular Biology

Overexpression of LeNHX4 improved yield, fruit quality and salt tolerance in tomato plants (Solanum lycopersicum L.)

Mostapha Maach et al.

MOLECULAR BIOLOGY REPORTS (2020)

Article Biochemistry & Molecular Biology

TBtools: An Integrative Toolkit Developed for Interactive Analyses of Big Biological Data

Chengjie Chen et al.

MOLECULAR PLANT (2020)

Article Genetics & Heredity

Molecular characterization and expression analysis of the Na+/H+ exchanger gene family in Medicago truncatula

Devinder Sandhu et al.

FUNCTIONAL & INTEGRATIVE GENOMICS (2018)

Article Biochemistry & Molecular Biology

The European Bioinformatics Institute in 2017: data coordination and integration

Charles E. Cook et al.

NUCLEIC ACIDS RESEARCH (2018)

Review Plant Sciences

Calcium signaling during salt stress and in the regulation of ion homeostasis

Prabha Manishankar et al.

JOURNAL OF EXPERIMENTAL BOTANY (2018)

Article Agronomy

Effects of Salinity Stress at Different Growth Stages on Tomato Growth, Yield, and Water-Use Efficiency

Pengfei Zhang et al.

COMMUNICATIONS IN SOIL SCIENCE AND PLANT ANALYSIS (2017)

Review Biochemical Research Methods

HKT transporters mediate salt stress resistance in plants: from structure and function to the field

Shin Hamamoto et al.

CURRENT OPINION IN BIOTECHNOLOGY (2015)

Article Biochemistry & Molecular Biology

The MEME Suite

Timothy L. Bailey et al.

NUCLEIC ACIDS RESEARCH (2015)

Review Environmental Sciences

Effect of salinity stress on plants and its tolerance strategies: a review

Parul Parihar et al.

ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH (2015)

Article Biochemistry & Molecular Biology

The Sol Genomics Network (SGN)-from genotype to phenotype to breeding

Noe Fernandez-Pozo et al.

NUCLEIC ACIDS RESEARCH (2015)

Review Plant Sciences

Plant salt-tolerance mechanisms

Ulrich Deinlein et al.

TRENDS IN PLANT SCIENCE (2014)

Review Plant Sciences

Sodium transport system in plant cells

Toshio Yamaguchi et al.

FRONTIERS IN PLANT SCIENCE (2013)

Article Plant Sciences

Physiology of acclimation to salinity stress in pea (Pisum sativum)

Camilla Pandolfi et al.

ENVIRONMENTAL AND EXPERIMENTAL BOTANY (2012)

Article Plant Sciences

Organ-dependent oxylipin signature in leaves and roots of salinized tomato plants (Solanum lycopersicum)

Michel Edmond Ghanem et al.

JOURNAL OF PLANT PHYSIOLOGY (2012)

Article Biochemistry & Molecular Biology

Phytozome: a comparative platform for green plant genomics

David M. Goodstein et al.

NUCLEIC ACIDS RESEARCH (2012)

Article Biochemistry & Molecular Biology

MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity

Yupeng Wang et al.

NUCLEIC ACIDS RESEARCH (2012)

Article Plant Sciences

Expression of LeNHX isoforms in response to salt stress in salt sensitive and salt tolerant tomato species

Francisco Javier Galvez et al.

PLANT PHYSIOLOGY AND BIOCHEMISTRY (2012)

Article Biochemical Research Methods

I-TASSER: a unified platform for automated protein structure and function prediction

Ambrish Roy et al.

NATURE PROTOCOLS (2010)

Review Physiology

Plant Ion Channels: Gene Families, Physiology, and Functional Genomics Analyses

John M. Ward et al.

ANNUAL REVIEW OF PHYSIOLOGY (2009)

Review Plant Sciences

The CBL-CIPK Ca2+-decoding signaling network: function and perspectives

Stefan Weinl et al.

NEW PHYTOLOGIST (2009)

Article Biochemistry & Molecular Biology

STRING 8-a global view on proteins and their functional interactions in 630 organisms

Lars J. Jensen et al.

NUCLEIC ACIDS RESEARCH (2009)

Review Plant Sciences

Mechanisms of salinity tolerance

Rana Munns et al.

ANNUAL REVIEW OF PLANT BIOLOGY (2008)

Review Biochemistry & Molecular Biology

Calcium- and salt-stress signaling in plants: Shedding light on SOS pathway

Shilpi Mahajan et al.

ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS (2008)

Article Biochemical Research Methods

I-TASSER server for protein 3D structure prediction

Yang Zhang

BMC BIOINFORMATICS (2008)

Review Plant Sciences

Potassium transport and plant salt tolerance

Sergey Shabala et al.

PHYSIOLOGIA PLANTARUM (2008)

Article Plant Sciences

Alkali cation exchangers: roles in cellular homeostasis and stress tolerance

JM Pardo et al.

JOURNAL OF EXPERIMENTAL BOTANY (2006)

Review Cell Biology

Evolutionary origins of eukaryotic sodium/proton exchangers

CL Brett et al.

AMERICAN JOURNAL OF PHYSIOLOGY-CELL PHYSIOLOGY (2005)

Review Plant Sciences

Salinity tolerance in Brassica oilseeds

M Ashraf et al.

CRITICAL REVIEWS IN PLANT SCIENCES (2004)

Article Multidisciplinary Sciences

Topological analysis of a plant vacuolar Na+/H+ antiporter reveals a luminal C terminus that regulates antiporter cation selectivity

T Yamaguchi et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)

Article Biochemistry & Molecular Biology

ExPASy: the proteomics server for in-depth protein knowledge and analysis

E Gasteiger et al.

NUCLEIC ACIDS RESEARCH (2003)

Article Biochemistry & Molecular Biology

A novel intracellular K+/H+ antiporter related to Na+/H+ antiporters is important for K+ ion homeostasis in plants

K Venema et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2003)

Review Plant Sciences

Na+ tolerance and Na+ transport in higher plants

M Tester et al.

ANNALS OF BOTANY (2003)

Article Biotechnology & Applied Microbiology

Overexpression of a plasma membrane Na+/H+ antiporter gene improves salt tolerance in Arabidopsis thaliana

HZ Shi et al.

NATURE BIOTECHNOLOGY (2003)

Article Ecology

A simple covarion-based approach to analyse nucleotide substitution rates

J Siltberg et al.

JOURNAL OF EVOLUTIONARY BIOLOGY (2002)

Article Multidisciplinary Sciences

Regulation of SOS1, a plasma membrane Na+/H+ exchanger in Arabidopsis thaliana, by SOS2 and SOS3

QS Qiu et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)

Article Biochemistry & Molecular Biology

Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes

A Krogh et al.

JOURNAL OF MOLECULAR BIOLOGY (2001)

Article Multidisciplinary Sciences

The evolutionary fate and consequences of duplicate genes

M Lynch et al.

SCIENCE (2000)

Article Multidisciplinary Sciences

The Arabidopsis thaliana salt tolerance gene SOS1 encodes a putative Na+/H+ antiporter

HZ Shi et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2000)

Article Biochemistry & Molecular Biology

The Protein Data Bank

HM Berman et al.

NUCLEIC ACIDS RESEARCH (2000)