Related references
Note: Only part of the references are listed.Stress promotes RNA G-quadruplex folding in human cells
Prakash Kharel et al.
NATURE COMMUNICATIONS (2023)
Watching ion-driven kinetics of ribozyme folding and misfolding caused by energetic and topological frustration one molecule at a time
Naoto Hori et al.
NUCLEIC ACIDS RESEARCH (2023)
Mass Spectrometry of Nucleic Acid Noncovalent Complexes
Eric Largy et al.
CHEMICAL REVIEWS (2022)
Twisting DNA by salt
Sergio Cruz-Leon et al.
NUCLEIC ACIDS RESEARCH (2022)
Combining Coarse-Grained Simulations and Single Molecule Analysis Reveals a Three-State Folding Model of the Guanidine-II Riboswitch
Christin Fuks et al.
FRONTIERS IN MOLECULAR BIOSCIENCES (2022)
Insights into the structural dynamics and helicase-catalyzed unfolding of plant RNA G-quadruplexes
Liu Wang et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2022)
Targeting RNA G-Quadruplex in SARS-CoV-2: A Promising Therapeutic Target for COVID-19?
Chuanqi Zhao et al.
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2021)
G-Quadruplexes in RNA Biology: Recent Advances and Future Directions
Leila Dumas et al.
TRENDS IN BIOCHEMICAL SCIENCES (2021)
The Folding Landscapes of Human Telomeric RNA and DNA G-Quadruplexes are Markedly Different
Diana Muller et al.
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2021)
Targeting GRK5 for Treating Chronic Degenerative Diseases
Federica Marzano et al.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2021)
Unraveling the Kinetics of Spare-Tire DNA G-Quadruplex Folding
J. Tassilo Gruen et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2021)
Structure Validation of G-Rich RNAs in Noncoding Regions of the Human Genome
Oliver Binas et al.
CHEMBIOCHEM (2020)
Pre-folded structures govern folding pathways of human telomeric G-quadruplexes
Tjasa Frelih et al.
NUCLEIC ACIDS RESEARCH (2020)
Same fold, different properties: polarizable molecular dynamics simulations of telomeric and TERRA G-quadruplexes
Justin A. Lemkul
NUCLEIC ACIDS RESEARCH (2020)
Polarizable Molecular Dynamics Simulations of Two c-kit Oncogene Promoter G-Quadruplexes: Effect of Primary and Secondary Structure on Loop and Ion Sampling
Alexa M. Salsbury et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2020)
Properties and biological impact of RNA G-quadruplexes: from order to turmoil and back
Prakash Kharel et al.
NUCLEIC ACIDS RESEARCH (2020)
RNA G-quadruplex structures exist and function in vivo in plants
Xiaofei Yang et al.
GENOME BIOLOGY (2020)
A high-throughput screen identifies small molecule modulators of alternative splicing by targeting RNA G-quadruplexes
Jing Zhang et al.
NUCLEIC ACIDS RESEARCH (2019)
Splice-Break: exploiting an RNA-seq splice junction algorithm to discover mitochondrial DNA deletion breakpoints and analyses of psychiatric disorders
Brooke E. Hjelm et al.
NUCLEIC ACIDS RESEARCH (2019)
Parallel G-triplexes and G-hairpins as potential transitory ensembles in the folding of parallel-stranded DNA G-Quadruplexes
Petr Stadlbauer et al.
NUCLEIC ACIDS RESEARCH (2019)
Theory and simulations for RNA folding in mixtures of monovalent and divalent cations
Hung T. Nguyen et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)
Tracking the Dynamic Folding and Unfolding of RNA G-Quadruplexes in Live Cells
Xiu-Cai Chen et al.
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2018)
Force fields for monovalent and divalent metal cations in TIP3P water based on thermodynamic and kinetic properties
Shavkat Mamatkulov et al.
JOURNAL OF CHEMICAL PHYSICS (2018)
Coarse-Grained Double-Stranded RNA Model from Quantum-Mechanical Calculations
Sergio Cruz-Leon et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2018)
Structural dynamics of propeller loop: towards folding of RNA G-quadruplex
Marek Havrila et al.
NUCLEIC ACIDS RESEARCH (2018)
Molecular Simulations of Ion Effects on the Thermodynamics of RNA Folding
Natalia A. Denesyuk et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2018)
Origin of Ion Specificity of Telomeric DNA G-Quadruplexes Investigated by Free-Energy Simulations
Till Siebenmorgen et al.
BIOPHYSICAL JOURNAL (2017)
Solution NMR Structure of a Ligand/Hybrid-2-G-Quadruplex Complex Reveals Rearrangements that Affect Ligand Binding
Julia Wirmer-Bartoschek et al.
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2017)
Folding of guanine quadruplex molecules-funnel-like mechanism or kinetic partitioning? An overview from MD simulation studies
Jiri Sponer et al.
BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS (2017)
SimRNA: a coarse-grained method for RNA folding simulations and 3D structure prediction
Michal J. Boniecki et al.
NUCLEIC ACIDS RESEARCH (2016)
Coarse-Grained Simulations Complemented by Atomistic Molecular Dynamics Provide New Insights into Folding and Unfolding of Human Telomeric G-Quadruplexes
Petr Stadlbauer et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2016)
Salt Effects on the Thermodynamics of a Frameshifting RNA Pseudoknot under Tension
Naoto Hori et al.
JOURNAL OF MOLECULAR BIOLOGY (2016)
Computational Insights into the Stability and Folding Pathways of Human Telomeric DNA G-Quadruplexes
Di Luo et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2016)
Folding and misfolding pathways of G-quadruplex DNA
Adrien Marchand et al.
NUCLEIC ACIDS RESEARCH (2016)
RNA G-quadruplexes are globally unfolded in eukaryotic cells and depleted in bacteria
Junjie U. Guo et al.
SCIENCE (2016)
Metal Cations in G-Quadruplex Folding and Stability
Debmalya Bhattacharyya et al.
FRONTIERS IN CHEMISTRY (2016)
Involvement of Long-Lived Intermediate States in the Complex Folding Pathway of the Human Telomeric G-Quadruplex
Irene Bessi et al.
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2015)
How do metal ions direct ribozyme folding?
Natalia A. Denesyuk et al.
NATURE CHEMISTRY (2015)
The tale of RNA G-quadruplex
Prachi Agarwala et al.
ORGANIC & BIOMOLECULAR CHEMISTRY (2015)
Folding and Unfolding Pathways of the Human Telomeric G-Quadruplex
Robert D. Gray et al.
JOURNAL OF MOLECULAR BIOLOGY (2014)
G-triplex structure and formation propensity
Linda Cerofolini et al.
NUCLEIC ACIDS RESEARCH (2014)
Atomistic Picture for the Folding Pathway of a Hybrid-1 Type Human Telomeric DNA G-quadruplex
Yunqiang Bian et al.
PLOS COMPUTATIONAL BIOLOGY (2014)
The G-Triplex DNA
Vittorio Limongelli et al.
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2013)
Coarse-Grained Model for Predicting RNA Folding Thermodynamics
Natalia A. Denesyuk et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2013)
DNA quadruplex folding formalism - A tutorial on quadruplex topologies
Andreas Ioannis Karsisiotis et al.
METHODS (2013)
Spectroscopic, Molecular Modeling, and NMR-Spectroscopic Investigation of the Binding Mode of the Natural Alkaloids Berberine and Sanguinarine to Human Telomeric G-Quadruplex DNA
Irene Bessi et al.
ACS CHEMICAL BIOLOGY (2012)
The Kinetics and Folding Pathways of Intramolecular G-Quadruplex Nucleic Acids
Amy Y. Q. Zhang et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2012)
An Intramolecular G-Quadruplex Structure Is Required for Binding of Telomeric Repeat-Containing RNA to the Telomeric Protein TRF2
Giulia Biffi et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2012)
NMR spectroscopy of G-quadruplexes
Michael Adrian et al.
METHODS (2012)
A Sequence-Independent Analysis of the Loop Length Dependence of Intramolecular RNA G-Quadruplex Stability and Topology
Amy Y. Q. Zhang et al.
BIOCHEMISTRY (2011)
Refinement of the Cornell et al. Nucleic Acids Force Field Based on Reference Quantum Chemical Calculations of Glycosidic Torsion Profiles
Marie Zgarbova et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2011)
ModeRNA: a tool for comparative modeling of RNA 3D structure
Magdalena Rother et al.
NUCLEIC ACIDS RESEARCH (2011)
HiRE-RNA: A High Resolution Coarse-Grained Energy Model for RNA
Samuela Pasquali et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2010)
G-quadruplex structures in RNA stimulate mitochondrial transcription termination and primer formation
Paulina H. Wanrooij et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
Structure of Propeller-Type Parallel-Stranded RNA G-Quadruplexes, Formed by Human Telomeric RNA Sequences in K+ Solution
Herry Martadinata et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2009)
GROMACS 4: Algorithms for highly efficient, load-balanced, and scalable molecular simulation
Berk Hess et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2008)
Efficient and Direct Generation of Multidimensional Free Energy Surfaces via Adiabatic Dynamics without Coordinate Transformations
Jerry B. Abrams et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2008)
Telomerase recruitment by the telomere end binding protein-β facilitates G-quadruplex DNA unfolding in ciliates
Katrin Paeschke et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2008)
Crystallographic studies of quadruplex nucleic acids
Nancy H. Campbell et al.
METHODS (2007)
Telomeric repeat-containing RNA and RNA surveillance factors at mammalian chromosome ends
Claus M. Azzalin et al.
SCIENCE (2007)
Structure of the Hybrid-2 type intramolecular human telomeric G-quadruplex in K+ solution:: insights into structure polymorphism of the human telomeric sequence
Jixun Dai et al.
NUCLEIC ACIDS RESEARCH (2007)
Refinenement of the AMBER force field for nucleic acids:: Improving the description of α/γ conformers
Alberto Perez et al.
BIOPHYSICAL JOURNAL (2007)
Structure of the intramolecular human telomeric G-quadruplex in potassium solution: a novel adenine triple formation
Jixun Dai et al.
NUCLEIC ACIDS RESEARCH (2007)
Canonical sampling through velocity rescaling
Giovanni Bussi et al.
JOURNAL OF CHEMICAL PHYSICS (2007)
Mechanical unfolding of RNA hairpins
C Hyeon et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
Telomere dysfunction in aging and cancer
D Gilley et al.
INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY (2005)
Analysis of thermal melting curves
JL Mergny et al.
OLIGONUCLEOTIDES (2003)
In vitro generated antibodies specific for telomeric guanine-quadruplex DNA react with Stylonychia lemnae macronuclei
C Schaffitzel et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2001)
Share Paper
