☆ 4.7 Review

The Potential of Meta-Proteomics and Artificial Intelligence to Establish the Next Generation of Probiotics for Personalized Healthcare

JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY (2023)

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JOURNAL OF PROTEOME RESEARCH (2017)

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Article Medicine, General & Internal

Microbiome at the Frontier of Personalized Medicine

Purna C. Kashyap et al.

MAYO CLINIC PROCEEDINGS (2017)

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Article Microbiology

Evaluation of the effect of soymilk fermented by a riboflavin-producing Lactobacillus plantarum strain in a murine model of colitis

R. Levit et al.

BENEFICIAL MICROBES (2017)

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Article Microbiology

Next-generation probiotics: the spectrum from probiotics to live biotherapeutics

Paul W. O'Toole et al.

NATURE MICROBIOLOGY (2017)

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Review Critical Care Medicine

Precision medicine for all? Challenges and opportunities for a precision medicine approach to critical illness

Christopher W. Seymour et al.

CRITICAL CARE (2017)

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Article Gastroenterology & Hepatology

Identification of an anti-inflammatory protein from Faecalibacterium prausnitzii, a commensal bacterium deficient in Crohn's disease

E. Quevrain et al.

GUT (2016)

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Article Chemistry, Applied

Polysaccharide structures and interactions in a lithium chloride/urea/water solvent

Charles G. Winkworth-Smith et al.

CARBOHYDRATE POLYMERS (2016)

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Article Microbiology

Stable Engraftment of Bifidobacterium longum AH1206 in the Human Gut Depends on Individualized Features of the Resident Microbiome

Maria X. Maldonado-Gomez et al.

Cell Host & Microbe (2016)

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Review Pharmacology & Pharmacy

Drying techniques of probiotic bacteria as an important step towards the development of novel pharmabiotics

Geraldine Broeckx et al.

INTERNATIONAL JOURNAL OF PHARMACEUTICS (2016)

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Article Agriculture, Dairy & Animal Science

Identification of surface-associated proteins of Bifidobacterium animalis ssp lactis KLDS 2.0603 by enzymatic shaving

Dequan Zhu et al.

JOURNAL OF DAIRY SCIENCE (2016)

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Article Immunology

Lactobacillus pentosus strain LPS16 produces lactic acid, inhibiting multidrug-resistant Helicobacter pylori

Po-Xing Zheng et al.

JOURNAL OF MICROBIOLOGY IMMUNOLOGY AND INFECTION (2016)

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Article Biochemical Research Methods

A Surface Biotinylation Strategy for Reproducible Plasma Membrane Protein Purification and Tracking of Genetic and Drug-Induced Alterations

Katrin Hoermann et al.

JOURNAL OF PROTEOME RESEARCH (2016)

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Article Microbiology

The impact of sequence database choice on metaproteomic results in gut microbiota studies

Alessandro Tanca et al.

MICROBIOME (2016)

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Article Biotechnology & Applied Microbiology

Drying process strongly affects probiotics viability and functionalities

Cyril Iaconelli et al.

JOURNAL OF BIOTECHNOLOGY (2015)

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Editorial Material Multidisciplinary Sciences

Time for one-person trials

Nicholas J. Schork

NATURE (2015)

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Article Biochemical Research Methods

Uncovering Surface-Exposed Antigens of Lactobacillus rhamnosus by Cell Shaving Proteomics and Two-Dimensional Immunoblotting

Eva Espino et al.

JOURNAL OF PROTEOME RESEARCH (2015)

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Article Peripheral Vascular Disease

Effect of Probiotics on Blood Pressure A Systematic Review and Meta-Analysis of Randomized, Controlled Trials

Saman Khalesi et al.

HYPERTENSION (2014)

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Article Biochemical Research Methods

Proteomic Profiling of the Acid Stress Response in Lactobacillus plantarum 423

Tiaan Heunis et al.

JOURNAL OF PROTEOME RESEARCH (2014)

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Article Biochemical Research Methods

Integrated Transcriptomic and Proteomic Analysis of the Bile Stress Response in a Centenarian-originated Probiotic Bifidobacterium longum BBMN68

Haoran An et al.

MOLECULAR & CELLULAR PROTEOMICS (2014)

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Article Gastroenterology & Hepatology

The International Scientific Association for Probiotics and Prebiotics consensus statement on the scope and appropriate use of the term probiotic

Colin Hill et al.

NATURE REVIEWS GASTROENTEROLOGY & HEPATOLOGY (2014)

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Article Biotechnology & Applied Microbiology

S-Layer Protein Mediates the Stimulatory Effect of Lactobacillus helveticus MIMLh5 on Innate Immunity

Valentina Taverniti et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2013)

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Article Biochemical Research Methods

Proteomic and Transcriptional Analysis of Lactobacillus johnsonii PF01 during Bile Salt Exposure by iTRAQ Shotgun Proteomics and Quantitative RT-PCR

Ji Yoon Lee et al.

JOURNAL OF PROTEOME RESEARCH (2013)

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Article Biochemical Research Methods

Surface Proteome Analysis of a Natural Isolate of Lactococcus lactis Reveals the Presence of Pili Able to Bind Human Intestinal Epithelial Cells

Mickael Meyrand et al.

MOLECULAR & CELLULAR PROTEOMICS (2013)

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Article Biochemical Research Methods

Mass spectrometry of intact membrane protein complexes

Arthur Laganowsky et al.

NATURE PROTOCOLS (2013)

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Article Microbiology

Identification of extracellular surface-layer associated proteins in Lactobacillus acidophilus NCFM

Brant Johnson et al.

MICROBIOLOGY-SGM (2013)

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Article Multidisciplinary Sciences

Cross-talk between Akkermansia muciniphila and intestinal epithelium controls diet-induced obesity

Amandine Everard et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)

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Article Infectious Diseases

Metagenomics and probiotics

M. Gueimonde et al.

CLINICAL MICROBIOLOGY AND INFECTION (2012)

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Article Ecology

Ruminococcus bromii is a keystone species for the degradation of resistant starch in the human colon

Xiaolei Ze et al.

ISME JOURNAL (2012)

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Article Biochemical Research Methods

Investigation of Biomarkers of Bile Tolerance in Lactobacillus casei Using Comparative Proteomics

Erwann Hamon et al.

JOURNAL OF PROTEOME RESEARCH (2012)

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Article Biochemical Research Methods

Another turn of the screw in shaving Gram-positive bacteria: Optimization of proteomics surface protein identification in Streptococcus pneumoniae

Alfonso Olaya-Abril et al.

JOURNAL OF PROTEOMICS (2012)

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Article Biotechnology & Applied Microbiology

Identification of Candidate Carrier Proteins for Surface Display on Lactococcus lactis by Theoretical and Experimental Analyses of the Surface Proteome

Ales Berlec et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2011)

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Article Biochemical Research Methods

Proteomics and Transcriptomics Characterization of Bile Stress Response in Probiotic Lactobacillus rhamnosus GG

Kerttu Koskenniemi et al.

MOLECULAR & CELLULAR PROTEOMICS (2011)

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Review Biochemical Research Methods

Current methodologies for proteomics of bacterial surface-exposed and cell envelope proteins

Nestor Solis et al.

PROTEOMICS (2011)

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Article Biotechnology & Applied Microbiology

Combined Transcriptome and Proteome Analysis of Bifidobacterium animalis subsp. lactis BB-12 Grown on Xylo-Oligosaccharides and a Model of Their Utilization

Ofir Gilad et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2010)

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Article Biochemical Research Methods

Quantitative Cell Surface Proteome Profiling for SigB-Dependent Protein Expression in the Human Pathogen Staphylococcus aureus via Biotinylation Approach

Kristina Hempel et al.

JOURNAL OF PROTEOME RESEARCH (2010)

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Article Biochemical Research Methods

Gel and gel-free proteomics to identify Saccharomyces cerevisiae cell surface proteins

Maria Rosa Insenser et al.

JOURNAL OF PROTEOMICS (2010)

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Review Microbiology

Host interactions of probiotic bacterial surface molecules: comparison with commensals and pathogens

Sarah Lebeer et al.

NATURE REVIEWS MICROBIOLOGY (2010)

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Article Gastroenterology & Hepatology

Responders and non-responders to probiotic interventions How can we improve the odds?

Gregor Reid et al.

GUT MICROBES (2010)

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Article Engineering, Biomedical

Proteomics by Mass Spectrometry: Approaches, Advances, and Applications

John R. Yates et al.

Annual Review of Biomedical Engineering (2009)

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Article Agriculture, Dairy & Animal Science

Monitoring the authenticity of low-fat yogurts by an artificial neural network

A. G. da Cruz et al.

JOURNAL OF DAIRY SCIENCE (2009)

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Article Biochemical Research Methods

Surfome Analysis as a Fast Track to Vaccine Discovery

Francesco Doro et al.

MOLECULAR & CELLULAR PROTEOMICS (2009)

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Article Biotechnology & Applied Microbiology

Overcoming function annotation errors in the Gram-positive pathogen Streptococcus suis by a proteomics-driven approach

Manuel J. Rodriguez-Ortega et al.

BMC GENOMICS (2008)

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Article Biochemical Research Methods

Detergent-Based but Gel-Free Method Allows Identification of Several Hundred Membrane Proteins in Single LC-MS Runs

Nagarjuna Nagaraj et al.

JOURNAL OF PROTEOME RESEARCH (2008)

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Review Chemistry, Multidisciplinary

Proteomics of integral membrane proteins-theory and application

Anna E. Speers et al.

CHEMICAL REVIEWS (2007)

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Article Agriculture, Dairy & Animal Science

Estimation of storage time of yogurt with artificial neural network modeling

A. Sofu et al.

JOURNAL OF DAIRY SCIENCE (2007)

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Article Microbiology

Identification and purification of a novel adhesion-associated protein in a new strain of Lactobacillus, L15, from flounder (Paralichthys olivaceus)

Chen Ying et al.

VETERINARY MICROBIOLOGY (2007)

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Article Gastroenterology & Hepatology

Soluble proteins produced by probiotic bacteria regulate intestinal epithelial cell survival and growth

Fang Yan et al.

GASTROENTEROLOGY (2007)

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Review Biotechnology & Applied Microbiology

Alternative drying processes for the industrial preservation of lactic acid starter cultures

Chalat Santivarangkna et al.

BIOTECHNOLOGY PROGRESS (2007)

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Article Biochemical Research Methods

An optimized strategy for ICAT quantification of membrane proteins

C Ramus et al.

MOLECULAR & CELLULAR PROTEOMICS (2006)

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Review Microbiology

Technologies for bacterial surface proteomics

SJ Cordwell

CURRENT OPINION IN MICROBIOLOGY (2006)

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Article Biochemical Research Methods

The biotin-streptavidin interaction can be reversibly broken using water at elevated temperatures

A Holmberg et al.

ELECTROPHORESIS (2005)

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Article Biochemical Research Methods

Characterization of low abundant membrane proteins using the protein sequence tag technology

T Prinz et al.

JOURNAL OF PROTEOME RESEARCH (2004)

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Article Biochemical Research Methods

Expression profiling of lymphocyte plasma membrane proteins

MJ Peirce et al.

MOLECULAR & CELLULAR PROTEOMICS (2004)

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Article Biochemical Research Methods

Isotope-coded affinity tag (ICAT) approach to redox proteomics: Identification and quantitation of oxidant-sensitive cysteine thiols in complex protein mixtures

M Sethuraman et al.

JOURNAL OF PROTEOME RESEARCH (2004)

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Review Microbiology

Potential uses of Probiotics in clinical practice

G Reid et al.

CLINICAL MICROBIOLOGY REVIEWS (2003)

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Review Biotechnology & Applied Microbiology

The application of mass spectrometry to membrane proteomics

CC Wu et al.

NATURE BIOTECHNOLOGY (2003)

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Review Nutrition & Dietetics

Probiotics: Considerations for human health

ME Sanders

NUTRITION REVIEWS (2003)

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Article Biochemical Research Methods

Affinity labeling of highly hydrophobic integral membrane proteins for proteome-wide analysis

MB Goshe et al.

JOURNAL OF PROTEOME RESEARCH (2003)

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Article Biotechnology & Applied Microbiology

Mucosa-associated bacteria in the human gastrointestinal tract are uniformly distributed along the colon and differ from the community recovered from feces

EG Zoetendal et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2002)

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Article Biotechnology & Applied Microbiology

Quantitative profiling of differentiation-induced microsomal proteins using isotope-coded affinity tags and mass spectrometry

DK Han et al.

NATURE BIOTECHNOLOGY (2001)

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Article Agriculture, Dairy & Animal Science

Probiotic culture survival and implications in fermented frozen yogurt characteristics

RH Davidson et al.

JOURNAL OF DAIRY SCIENCE (2000)

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