4.6 Review

Current Status of Marker Genes of Bacteroides and Related Taxa for Identifying Sewage Pollution in Environmental Waters

Related references

Note: Only part of the references are listed.
Article Biotechnology & Applied Microbiology

Distributions of Fecal Markers in Wastewater from Different Climatic Zones for Human Fecal Pollution Tracking in Australian Surface Waters

W. Ahmed et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2016)

Article Biotechnology & Applied Microbiology

Data Acceptance Criteria for Standardized Human-Associated Fecal Source Identification Quantitative Real-Time PCR Methods

Orin C. Shanks et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2016)

Article Biotechnology & Applied Microbiology

Ultrafiltration and Microarray for Detection of Microbial Source Tracking Marker and Pathogen Genes in Riverine and Marine Systems

Xiang Li et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2016)

Article Biotechnology & Applied Microbiology

Microbial Source Tracking in Adjacent Karst Springs

Shoshanit Ohad et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2015)

Article Biotechnology & Applied Microbiology

Toolbox Approaches Using Molecular Markers and 16S rRNA Gene Amplicon Data Sets for Identification of Fecal Pollution in Surface Water

W. Ahmed et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2015)

Article Biotechnology & Applied Microbiology

Comparison of Sewage and Animal Fecal Microbiomes by Using Oligotyping Reveals Potential Human Fecal Indicators in Multiple Taxonomic Groups

Jenny C. Fisher et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2015)

Article Environmental Sciences

Fecal Contamination in the Surface Waters of a Rural- and an Urban-Source Watershed

Emma C. Stea et al.

JOURNAL OF ENVIRONMENTAL QUALITY (2015)

Article Environmental Sciences

Prevalence of and Relationship between Two Human-Associated DNA Biomarkers for Bacteroidales in an Urban Watershed

Tricia Coakley et al.

JOURNAL OF ENVIRONMENTAL QUALITY (2015)

Article Environmental Sciences

Differential occurrence of Escherichia coli and human Bacteroidales at two Great Lakes beaches

Zachery R. Staley et al.

JOURNAL OF GREAT LAKES RESEARCH (2015)

Article Environmental Sciences

Storm loads of culturable and molecular fecal indicators in an inland urban stream

Hehuan Liao et al.

SCIENCE OF THE TOTAL ENVIRONMENT (2015)

Article Biotechnology & Applied Microbiology

Assessment of Giardia and Cryptosporidium spp. as a Microbial Source Tracking Tool for Surface Water: Application in a Mixed-Use Watershed

Natalie Prystajecky et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2014)

Article Biotechnology & Applied Microbiology

Improved HF183 Quantitative Real-Time PCR Assay for Characterization of Human Fecal Pollution in Ambient Surface Water Samples

Hyatt C. Green et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2014)

Article Biotechnology & Applied Microbiology

Distribution and abundance of human-specific Bacteroides and relation to traditional indicators in an urban tropical catchment

J. P. Nshimyimana et al.

JOURNAL OF APPLIED MICROBIOLOGY (2014)

Article Biotechnology & Applied Microbiology

Relative inactivation of faecal indicator bacteria and sewage markers in freshwater and seawater microcosms

W. Ahmed et al.

LETTERS IN APPLIED MICROBIOLOGY (2014)

Review Biochemistry & Molecular Biology

Discovering new indicators of fecal pollution

Sandra L. McLellan et al.

TRENDS IN MICROBIOLOGY (2014)

Article Engineering, Environmental

Canine Scent Detection and Microbial Source Tracking of Human Waste Contamination in Storm Drains

Laurie C. Van De Werfhorst et al.

WATER ENVIRONMENT RESEARCH (2014)

Article Engineering, Environmental

Decay of genetic markers for fecal bacterial indicators and pathogens in sand from Lake Superior

Jessica J. Eichmiller et al.

WATER RESEARCH (2014)

Article Engineering, Environmental

Distribution of Genetic Markers of Fecal Pollution on a Freshwater Sandy Shoreline in Proximity to Wastewater Effluent

Jessica J. Eichmiller et al.

ENVIRONMENTAL SCIENCE & TECHNOLOGY (2013)

Article Biotechnology & Applied Microbiology

Evaluation of the host specificity of Bacteroides thetaiotaomicron alpha-1-6, mannanase gene as a sewage marker

A. Aslan et al.

LETTERS IN APPLIED MICROBIOLOGY (2013)

Article Engineering, Environmental

Performance of forty-one microbial source tracking methods: A twenty-seven lab evaluation study

Alexandria B. Boehm et al.

WATER RESEARCH (2013)

Article Ecology

Oligotyping: differentiating between closely related microbial taxa using 16S rRNA gene data

A. Murat Eren et al.

METHODS IN ECOLOGY AND EVOLUTION (2013)

Article Biotechnology & Applied Microbiology

Occurrence and Persistence of Bacterial Pathogens and Indicator Organisms in Beach Sand along the California Coast

Kevan M. Yamahara et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2012)

Article Biotechnology & Applied Microbiology

Relevance of Bacteroidales and F-Specific RNA Bacteriophages for Efficient Fecal Contamination Tracking at the Level of a Catchment in France

Aourell Mauffret et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2012)

Article Biotechnology & Applied Microbiology

Distribution of Genetic Marker Concentrations for Fecal Indicator Bacteria in Sewage and Animal Feces

Catherine A. Keity et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2012)

Article Biotechnology & Applied Microbiology

Association of Fecal Indicator Bacteria with Human Viruses and Microbial Source Tracking Markers at Coastal Beaches Impacted by Nonpoint Source Pollution

Shannon McQuaig et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2012)

Article Biotechnology & Applied Microbiology

Microbial source tracking to identify human and ruminant sources of faecal pollution in an ephemeral Florida river

E. Chase et al.

JOURNAL OF APPLIED MICROBIOLOGY (2012)

Article Biotechnology & Applied Microbiology

Consistency in the host specificity and host sensitivity of the Bacteroides HF183 marker for sewage pollution tracking

W. Ahmed et al.

LETTERS IN APPLIED MICROBIOLOGY (2012)

Article Engineering, Environmental

Assessment of sources of human pathogens and fecal contamination in a Florida freshwater lake

Christopher Staley et al.

WATER RESEARCH (2012)

Article Engineering, Environmental

HuBac and nifH source tracking markers display a relationship to land use but not rainfall

Jennifer Gentry-Shields et al.

WATER RESEARCH (2012)

Article Biotechnology & Applied Microbiology

Comparison of the Host Specificities of Two Bacteroidales Quantitative PCR Assays Used for Tracking Human Fecal Contamination

Laurie C. Van De Werfhorst et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2011)

Article Microbiology

Differential decay of human faecal Bacteroides in marine and freshwater

Hyatt C. Green et al.

ENVIRONMENTAL MICROBIOLOGY (2011)

Article Engineering, Environmental

Sewage Exfiltration As a Source of Storm Drain Contamination during Dry Weather in Urban Watersheds

Bram Sercu et al.

ENVIRONMENTAL SCIENCE & TECHNOLOGY (2011)

Article Engineering, Environmental

Swimmer Risk of Gastrointestinal Illness from Exposure to Tropical Coastal Waters Impacted by Terrestrial Dry-Weather Runoff

Emily J. Viau et al.

ENVIRONMENTAL SCIENCE & TECHNOLOGY (2011)

Article Environmental Sciences

Quantitative PCR-based detection of pathogenic Leptospira in Hawai'ian coastal streams

Emily J. Viau et al.

JOURNAL OF WATER AND HEALTH (2011)

Article Environmental Sciences

Impact of population and latrines on fecal contamination of ponds in rural Bangladesh

Peter S. K. Knappett et al.

SCIENCE OF THE TOTAL ENVIRONMENT (2011)

Article Biotechnology & Applied Microbiology

Presence of Bacteroidales as a Predictor of Pathogens in Surface Waters of the Central California Coast

Alexander Schriewer et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2010)

Article Biotechnology & Applied Microbiology

Molecular Indicators Used in the Development of Predictive Models for Microbial Source Tracking

Elisenda Balleste et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2010)

Article Biotechnology & Applied Microbiology

Relative Decay of Bacteroidales Microbial Source Tracking Markers and Cultivated Escherichia coli in Freshwater Microcosms

Linda K. Dick et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2010)

Article Biochemistry & Molecular Biology

Quantitative PCR assay of sewage-associated Bacteroides markers to assess sewage pollution in an urban lake in Dhaka, Bangladesh

Warish Ahmed et al.

CANADIAN JOURNAL OF MICROBIOLOGY (2010)

Article Engineering, Environmental

Performance of PCR-Based Assays Targeting Bacteroidales Genetic Markers of Human Fecal Pollution in Sewage and Fecal Samples

Orin C. Shanks et al.

ENVIRONMENTAL SCIENCE & TECHNOLOGY (2010)

Article Engineering, Environmental

Use of Barcoded Pyrosequencing and Shared OTUs To Determine Sources of Fecal Bacteria in Watersheds

Tatsuya Unno et al.

ENVIRONMENTAL SCIENCE & TECHNOLOGY (2010)

Article Biotechnology & Applied Microbiology

Quantitative PCR for Genetic Markers of Human Fecal Pollution

Orin C. Shanks et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2009)

Article Biotechnology & Applied Microbiology

Estimation of Pig Fecal Contamination in a River Catchment by Real-Time PCR Using Two Pig-Specific Bacteroidales 16S rRNA Genetic Markers

Sophie Mieszkin et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2009)

Article Microbiology

Survival and persistence of human and ruminant-specific faecal Bacteroidales in freshwater microcosms

Sarah P. Walters et al.

ENVIRONMENTAL MICROBIOLOGY (2009)

Article Engineering, Environmental

Covariation and Photoinactivation of Traditional and Novel Indicator Organisms and Human Viruses at a Sewage-Impacted Marine Beach

Alexandria B. Boehm et al.

ENVIRONMENTAL SCIENCE & TECHNOLOGY (2009)

Article Engineering, Environmental

Storm Drains are Sources of Human Fecal Pollution during Dry Weather in Three Urban Southern California Watersheds

Brain Sercu et al.

ENVIRONMENTAL SCIENCE & TECHNOLOGY (2009)

Article Biotechnology & Applied Microbiology

Identification of a Brevibacterium Marker Gene Specific to Poultry Litter and Development of a Quantitative PCR Assay

Jennifer L. Weidhaas et al.

JOURNAL OF APPLIED MICROBIOLOGY (2009)

Article Engineering, Environmental

Validation and field testing of library-independent microbial source tracking methods in the Gulf of Mexico

Valerie J. Harwood et al.

WATER RESEARCH (2009)

Article Biotechnology & Applied Microbiology

Use of a Bacteroides thetaiotaomicron-specific α-1-6, mannanase quantitative PCR to detect human faecal pollution in water

H. Yampara-Iquise et al.

JOURNAL OF APPLIED MICROBIOLOGY (2008)

Article Biotechnology & Applied Microbiology

Evaluation of Bacteroides markers for the detection of human faecal pollution

W. Ahmed et al.

LETTERS IN APPLIED MICROBIOLOGY (2008)

Article Biotechnology & Applied Microbiology

Persistence of host-specific Bacteroides-Prevotella 16S rRNA genetic markers in environmental waters:: effects of temperature and salinity

Satoshi Okabe et al.

APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2007)

Article Biotechnology & Applied Microbiology

Evaluation of two library-independent microbial source tracking methods to identify sources of fecal contamination in french estuaries

Michele Gourmelon et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2007)

Review Engineering, Environmental

Fecal source tracking, the indicator paradigm, and managing water quality

Katharine G. Field et al.

WATER RESEARCH (2007)

Article Engineering, Environmental

Detection of Bacteroidales fecal indicators and the zoonotic pathogens E-Coli O157:H7, Salmonella, and Campylobacter in river water

Sarah P. Walters et al.

ENVIRONMENTAL SCIENCE & TECHNOLOGY (2007)

Article Biotechnology & Applied Microbiology

Quantification of host-specific Bacteroides-Prevotella 16S rRNA genetic markers for assessment of fecal pollution in freshwater

Satoshi Okabe et al.

APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2007)

Article Biotechnology & Applied Microbiology

Multiplex quantitative real-time reverse transcriptase PCR for F+-specific RNA coliphages:: a method for use in microbial source tracking

Marek Kirs et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2007)

Review Biotechnology & Applied Microbiology

Performance, design, and analysis in microbial source tracking studies

Donald M. Stoeckel et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2007)

Article Biotechnology & Applied Microbiology

Detection of the nifH gene of Methanobrevibacter smithii:: a potential tool to identify sewage pollution in recreational waters

J. A. Ufnar et al.

JOURNAL OF APPLIED MICROBIOLOGY (2006)

Article Biotechnology & Applied Microbiology

Development of Bacteroides 16S rRNA gene TaqMan-based real-time PCR assays for estimation of total, human, and bovine fecal pollution in water

Alice Layton et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2006)

Article Biotechnology & Applied Microbiology

Multitiered approach using quantitative PCR to track sources of fecal pollution affecting Santa Monica Bay, California

RT Noble et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2006)

Article Biotechnology & Applied Microbiology

Presence and growth of naturalized Escherichia coli in temperate soils from lake superior watersheds

S Ishii et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2006)

Article Biotechnology & Applied Microbiology

Specificity of a Bacteroides thetaiotaomicron marker for human Feces

CA Carson et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2005)

Article Biotechnology & Applied Microbiology

Validity of the indicator organism paradigm for pathogen reduction in reclaimed water and public health protection

VJ Harwood et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2005)

Article Biotechnology & Applied Microbiology

Persistence and differential survival of fecal indicator bacteria in subtropical waters and sediments

ML Anderson et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2005)

Article Engineering, Environmental

Potential use of a host associated molecular marker in Enterococcus faecium as an index of human fecal pollution

TM Scott et al.

ENVIRONMENTAL SCIENCE & TECHNOLOGY (2005)

Article Biotechnology & Applied Microbiology

Campylobacter spp., Giardia spp., Cryptosporidium noroviruses and indicator organisms in surface water in southwestern Finland, 2000-2001

A Horman et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2004)

Article Biotechnology & Applied Microbiology

Use of antibiotic resistance analysis for representativeness testing of multiwatershed libraries

BA Wiggins et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2003)

Article Engineering, Environmental

Application of a rapid method for identifying fecal pollution sources in a multi-use estuary

AE Bernhard et al.

WATER RESEARCH (2003)

Article Biotechnology & Applied Microbiology

Carbon source utilization profiles as a method to identify sources of faecal pollution in water

C Hagedorn et al.

JOURNAL OF APPLIED MICROBIOLOGY (2003)

Article Environmental Sciences

Geographic variability of Escherichia coli ribotypes from animals in Idaho and Georgia

PG Hartel et al.

JOURNAL OF ENVIRONMENTAL QUALITY (2002)

Article Biotechnology & Applied Microbiology

Sunlight inactivation of fecal indicator bacteria and bacteriophages from waste stabilization pond effluent in fresh and saline waters

LW Sinton et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2002)

Article Biotechnology & Applied Microbiology

Influence of soil on fecal indicator organisms in a tidally influenced subtropical environment

TR Desmarais et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2002)

Article Biotechnology & Applied Microbiology

A PCR assay to discriminate human and ruminant feces on the basis of host differences in Bacteroides-Prevotella genes encoding 16S rRNA

AE Bernhard et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2000)

Article Biotechnology & Applied Microbiology

Quantification of bacterial groups within human fecal flora by oligonucleotide probe hybridization

A Sghir et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2000)