Related references
Note: Only part of the references are listed.A Ratiometric Dual Color Luciferase Reporter for Fast Characterization of Transcriptional Regulatory Elements in Plants
Eduardo Gonzalez-Grandio et al.
ACS SYNTHETIC BIOLOGY (2021)
Plant Regulomics: a data-driven interface for retrieving upstream regulators from plant multi-omics data
Xiaojuan Ran et al.
PLANT JOURNAL (2020)
Branching Regulator BRC1 Mediates Photoperiodic Control of Seasonal Growth in Hybrid Aspen
Jay P. Maurya et al.
CURRENT BIOLOGY (2020)
Regulation of plant architecture by a new histone acetyltransferase targeting gene bodies
Xueyong Yang et al.
NATURE PLANTS (2020)
An Update on the Signals Controlling Shoot Branching
Francois F. Barbier et al.
TRENDS IN PLANT SCIENCE (2019)
The regulatory landscape of a core maize domestication module controlling bud dormancy and growth repression
Zhaobin Dong et al.
NATURE COMMUNICATIONS (2019)
Submerged Vegetation and Water Quality Degeneration From Serious Flooding in Liangzi Lake, China
Ligong Wang et al.
FRONTIERS IN PLANT SCIENCE (2019)
TF2Network: predicting transcription factor regulators and gene regulatory networks in Arabidopsis using publicly available binding site information
Shubhada R. Kulkarni et al.
NUCLEIC ACIDS RESEARCH (2018)
ATTED-II in 2018: A Plant Coexpression Database Based on Investigation of the Statistical Property of the Mutual Rank Index
Takeshi Obayashi et al.
PLANT AND CELL PHYSIOLOGY (2018)
To grow or not to grow, a power-saving program induced in dormant buds
Elena Sanchez Martin-Fontecha et al.
CURRENT OPINION IN PLANT BIOLOGY (2018)
An incoherent feed-forward loop switches the Arabidopsis clock rapidly between two hysteretic states
Ignasius Joanito et al.
SCIENTIFIC REPORTS (2018)
A unifying framework for fast randomization of ecological networks with fixed (node) degrees
Corrie Jacobien Carstens et al.
METHODSX (2018)
PANTHER version 11: expanded annotation data from Gene Ontology and Reactome pathways, and data analysis tool enhancements
Huaiyu Mi et al.
NUCLEIC ACIDS RESEARCH (2017)
Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds
Eduardo Gonzalez-Grandio et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)
An incoherent feed-forward loop mediates robustness and tunability in a plant immune network
Akira Mine et al.
EMBO REPORTS (2017)
Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape (vol 165, pg 1280, 2016)
Ronan C. O'Malley et al.
CELL (2016)
Control of Oriented Tissue Growth through Repression of Organ Boundary Genes Promotes Stem Morphogenesis
Stefano Bencivenga et al.
DEVELOPMENTAL CELL (2016)
A transcription factor hierarchy defines an environmental stress response network
Liang Song et al.
SCIENCE (2016)
A Mesoscale Abscisic Acid Hormone Interactome Reveals a Dynamic Signaling Landscape in Arabidopsis
Shelley Lumba et al.
DEVELOPMENTAL CELL (2014)
The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression
Alberto Coego et al.
PLANT JOURNAL (2014)
BRANCHED1 Promotes Axillary Bud Dormancy in Response to Shade in Arabidopsis
Eduardo Gonzalez-Grandio et al.
PLANT CELL (2013)
Fast gapped-read alignment with Bowtie 2
Ben Langmead et al.
NATURE METHODS (2012)
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
Cole Trapnell et al.
NATURE PROTOCOLS (2012)
Inferring direct DNA binding from ChIP-seq
Timothy L. Bailey et al.
NUCLEIC ACIDS RESEARCH (2012)
Sumoylation of transcription factor MYB30 by the small ubiquitin-like modifier E3 ligase SIZ1 mediates abscisic acid response in Arabidopsis thaliana
Yuan Zheng et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
DREME: motif discovery in transcription factor ChIP-seq data
Timothy L. Bailey
BIOINFORMATICS (2011)
MEME-ChIP: motif analysis of large DNA datasets
Philip Machanick et al.
BIOINFORMATICS (2011)
ABA-mediated transcriptional regulation in response to osmotic stress in plants
Yasunari Fujita et al.
JOURNAL OF PLANT RESEARCH (2011)
ChIP-Seq: technical considerations for obtaining high-quality data
Benjamin L. Kidder et al.
NATURE IMMUNOLOGY (2011)
ChIP-seq Analysis in R (CSAR): An R package for the statistical detection of protein-bound genomic regions
Jose M. Muino et al.
PLANT METHODS (2011)
Abscisic Acid: Emergence of a Core Signaling Network
Sean R. Cutler et al.
ANNUAL REVIEW OF PLANT BIOLOGY, VOL 61 (2010)
Regulation of transcription in plants: mechanisms controlling developmental switches
Kerstin Kaufmann et al.
NATURE REVIEWS GENETICS (2010)
Target Genes of the MADS Transcription Factor SEPALLATA3: Integration of Developmental and Hormonal Pathways in the Arabidopsis Flower
Kerstin Kaufmann et al.
PLOS BIOLOGY (2009)
Model-based Analysis of ChIP-Seq (MACS)
Yong Zhang et al.
GENOME BIOLOGY (2008)
Improved gateway binary vectors: High-performance vectors for creation of fusion constructs in Transgenic analysis of plants
Tsuyoshi Nakagawa et al.
BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY (2007)
Network motifs: theory and experimental approaches
Uri Alon
NATURE REVIEWS GENETICS (2007)
Arabidopsis BRANCHED1 acts as an integrator of branching signals within axillary buds
Jose Antonio Aguilar-Martinez et al.
PLANT CELL (2007)
ATTED-II: a database of co-expressed genes and cis elements for identifying co-regulated gene groups in Arabidopsis
Takeshi Obayashi et al.
NUCLEIC ACIDS RESEARCH (2007)
BiNGO: a Cytoscape plugin to assess overrepresentation of Gene Ontology categories in Biological Networks
S Maere et al.
BIOINFORMATICS (2005)
MAX1 encodes a cytochrome P450 family member that acts downstream of MAX3/4 to produce a carotenoid-derived branch-inhibiting hormone
J Booker et al.
DEVELOPMENTAL CELL (2005)
Uncoupling the effects of abscisic acid on plant growth and water relations.: Analysis of sto1/nced3, an abscisic acid-deficient but salt stress-tolerant mutant in arabidopsis
B Ruggiero et al.
PLANT PHYSIOLOGY (2004)
A gateway cloning vector set for high-throughput functional analysis of genes in planta
MD Curtis et al.
PLANT PHYSIOLOGY (2003)
Biochemical and molecular characterization of a hydroxyjasmonate sulfotransferase from Arabidopsis thaliana
SK Gidda et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2003)
Cytoscape: A software environment for integrated models of biomolecular interaction networks
P Shannon et al.
GENOME RESEARCH (2003)
Network motifs: Simple building blocks of complex networks
R Milo et al.
SCIENCE (2002)
Share Paper
