Related references
Note: Only part of the references are listed.The two Gtsf paralogs in silkworms orthogonally activate their partner PIWI proteins for target cleavage
Natsuko Izumi et al.
RNA (2023)
piRNA processing by a trimeric Schlafen-domain nuclease
Nadezda Podvalnaya et al.
NATURE (2023)
Harnessing protein folding neural networks for peptide-protein docking
Tomer Tsaban et al.
NATURE COMMUNICATIONS (2022)
Developmental roles and molecular mechanisms of Asterix/GTSF1
Jonathan J. Ipsaro et al.
WILEY INTERDISCIPLINARY REVIEWS-RNA (2022)
A structural biology community assessment of AlphaFold2 applications
Mehmet Akdel et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2022)
GTSF1 accelerates target RNA cleavage by PIWI-clade Argonaute proteins
Amena Arif et al.
NATURE (2022)
A novel transposable element-mediated mechanism causes antiviral resistance in Drosophila through truncating the Veneno protein
Osama Brosh et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2022)
SMART: recent updates, new developments and status in 2020
Ivica Letunic et al.
NUCLEIC ACIDS RESEARCH (2021)
DEAD-box polypeptide 43 facilitates piRNA amplification by actively liberating RNA from Ago3-piRISC
Ryo Murakami et al.
EMBO REPORTS (2021)
Asterix/Gtsf1 links tRNAs and piRNA silencing of retrotransposons
Jonathan J. Ipsaro et al.
CELL REPORTS (2021)
Highly accurate protein structure prediction with AlphaFold
John Jumper et al.
NATURE (2021)
Binding of guide piRNA triggers methylation of the unstructured N-terminal region of Aub leading to assembly of the piRNA amplification complex
Xiawei Huang et al.
NATURE COMMUNICATIONS (2021)
Pfam: The protein families database in 2021
Jaina Mistry et al.
NUCLEIC ACIDS RESEARCH (2021)
Zucchini consensus motifs determine the mechanism of pre-piRNA production
Natsuko Izumi et al.
NATURE (2020)
Siwi levels reversibly regulate secondary piRISC biogenesis by affecting Ago3 body morphology in Bombyx mori
Kazumichi M. Nishida et al.
EMBO JOURNAL (2020)
Gtsf1 is essential for proper female sex determination and transposon silencing in the silkworm, Bombyx mori
Kai Chen et al.
PLOS GENETICS (2020)
PIWI-interacting RNAs: small RNAs with big functions
Deniz M. Ozata et al.
NATURE REVIEWS GENETICS (2019)
The Tudor protein Veneno assembles the ping-pong amplification complex that produces viral piRNAs in Aedes mosquitoes
Joep Joosten et al.
NUCLEIC ACIDS RESEARCH (2019)
On the interaction of hyaluronic acid with synovial fluid lipid membranes
Paul Smith et al.
PHYSICAL CHEMISTRY CHEMICAL PHYSICS (2019)
Mouse GTSF1 is an essential factor for secondary piRNA biogenesis
Takuji Yoshimura et al.
EMBO REPORTS (2018)
IUPred2A: context-dependent prediction of protein disorder as a function of redox state and protein binding
Balint Meszaros et al.
NUCLEIC ACIDS RESEARCH (2018)
A Single Mechanism of Biogenesis, Initiated and Directed by PIWI Proteins, Explains piRNA Production in Most Animals
Ildar Gainetdinov et al.
MOLECULAR CELL (2018)
piRNA-Guided Genome Defense: From Biogenesis to Silencing
Benjamin Czech et al.
ANNUAL REVIEW OF GENETICS, VOL 52 (2018)
Identification and Functional Analysis of the Pre-piRNA 3′ Trimmer in Silkworms
Natsuko Izumi et al.
CELL (2016)
Genetic and mechanistic diversity of piRNA 3′-end formation
Rippei Hayashi et al.
NATURE (2016)
Water Dispersion Interactions Strongly Influence Simulated Structural Properties of Disordered Protein States
Stefano Piana et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2015)
Aub and Ago3 Are Recruited to Nuage through Two Mechanisms to Form a Ping-Pong Complex Assembled by Krimper
Alexandre Webster et al.
MOLECULAR CELL (2015)
Krimper Enforces an Antisense Bias on piRNA Pools by Binding AGO3 in the Drosophila Germline
Kaoru Sato et al.
MOLECULAR CELL (2015)
Phase Transition of a Disordered Nuage Protein Generates Environmentally Responsive Membraneless Organelles
Timothy J. Nott et al.
MOLECULAR CELL (2015)
piRNA-guided slicing specifies transcripts for Zucchini-dependent, phased piRNA biogenesis
Fabio Mohn et al.
SCIENCE (2015)
piRNA-guided transposon cleavage initiates Zucchini-dependent, phased piRNA production
Bo W. Han et al.
SCIENCE (2015)
PIWI Slicing and RNA Elements in Precursors Instruct Directional Primary piRNA Biogenesis
David Homolka et al.
CELL REPORTS (2015)
Respective Functions of Two Distinct Siwi Complexes Assembled during PIWI-Interacting RNA Biogenesis in Bombyx Germ Cells
Kazumichi M. Nishida et al.
CELL REPORTS (2015)
RNA Clamping by Vasa Assembles a piRNA Amplifier Complex on Transposon Transcripts
Jordi Xiol et al.
CELL (2014)
Short Linear Motifs: Ubiquitous and Functionally Diverse Protein Interaction Modules Directing Cell Regulation
Kim Van Roey et al.
CHEMICAL REVIEWS (2014)
Antisense piRNA amplification, but not piRNA production or nuage assembly, requires the Tudor-domain protein Qin
Zhao Zhang et al.
EMBO JOURNAL (2014)
A single female-specific piRNA is the primary determiner of sex in the silkworm
Takashi Kiuchi et al.
NATURE (2014)
DmGTSF1 is necessary for Piwi-piRISC-mediated transcriptional transposon silencing in the Drosophila ovary
Hitoshi Ohtani et al.
GENES & DEVELOPMENT (2013)
Drosophila Gtsf1 is an essential component of the Piwi-mediated transcriptional silencing complex
Derya Doenertas et al.
GENES & DEVELOPMENT (2013)
Residue-Specific α-Helix Propensities from Molecular Simulation
Robert B. Best et al.
BIOPHYSICAL JOURNAL (2012)
A Role for Fkbp6 and the Chaperone Machinery in piRNA Amplification and Transposon Silencing
Jordi Xiol et al.
MOLECULAR CELL (2012)
Fiji: an open-source platform for biological-image analysis
Johannes Schindelin et al.
NATURE METHODS (2012)
Vreteno, a gonad-specific protein, is essential for germline development and primary piRNA biogenesis in Drosophila
Andrea L. Zamparini et al.
DEVELOPMENT (2011)
A systematic analysis of Drosophila TUDOR domain-containing proteins identifies Vreteno and the Tdrd12 family as essential primary piRNA pathway factors
Dominik Handler et al.
EMBO JOURNAL (2011)
Tdrd1 acts as a molecular scaffold for Piwi proteins and piRNA targets in zebrafish
Hsin-Yi Huang et al.
EMBO JOURNAL (2011)
Software News and Updates MDAnalysis: A Toolkit for the Analysis of Molecular Dynamics Simulations
Naveen Michaud-Agrawal et al.
JOURNAL OF COMPUTATIONAL CHEMISTRY (2011)
Andromeda: A Peptide Search Engine Integrated into the MaxQuant Environment
Juergen Cox et al.
JOURNAL OF PROTEOME RESEARCH (2011)
3′ End Formation of PIWI-Interacting RNAs In Vitro
Shinpei Kawaoka et al.
MOLECULAR CELL (2011)
Heterotypic piRNA Ping-Pong Requires Qin, a Protein with Both E3 Ligase and Tudor Domains
Zhao Zhang et al.
MOLECULAR CELL (2011)
The endonuclease activity of Mili fuels piRNA amplification that silences LINE1 elements
Serena De Fazio et al.
NATURE (2011)
Deciphering arginine methylation: Tudor tells the tale
Chen Chen et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2011)
PIWI-interacting small RNAs: the vanguard of genome defence
Mikiko C. Siomi et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2011)
Structural basis for methylarginine-dependent recognition of Aubergine by Tudor
Haiping Liu et al.
GENES & DEVELOPMENT (2010)
How does the Royal Family of Tudor rule the PIWI-interacting RNA pathway?
Mikiko C. Siomi et al.
GENES & DEVELOPMENT (2010)
Arginine Methylation of Vasa Protein Is Conserved across Phyla
Yohei Kirino et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2010)
Improved side-chain torsion potentials for the Amber ff99SB protein force field
Kresten Lindorff-Larsen et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2010)
Jalview Version 2-a multiple sequence alignment editor and analysis workbench
Andrew M. Waterhouse et al.
BIOINFORMATICS (2009)
Proteomic analysis of murine Piwi proteins reveals a role for arginine methylation in specifying interaction with Tudor family members
Vasily V. Vagin et al.
GENES & DEVELOPMENT (2009)
Structure and Ligand Binding of the Extended Tudor Domain of D. melanogaster Tudor-SN
Anders Friberg et al.
JOURNAL OF MOLECULAR BIOLOGY (2009)
Optimized Molecular Dynamics Force Fields Applied to the Helix-Coil Transition of Polypeptides
Robert B. Best et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2009)
Multiplex peptide stable isotope dimethyl labeling for quantitative proteomics
Paul J. Boersema et al.
NATURE PROTOCOLS (2009)
Small silencing RNAs: an expanding universe
Megha Ghildiyal et al.
NATURE REVIEWS GENETICS (2009)
Loss of the Mili-interacting Tudor domain-containing protein-1 activates transposons and alters the Mili-associated small RNA profile
Michael Reuter et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2009)
The Bombyx ovary-derived cell line endogenously expresses PIWI/PIWI-interacting RNA complexes
Shinpei Kawaoka et al.
RNA (2009)
MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
Juergen Cox et al.
NATURE BIOTECHNOLOGY (2008)
Clustal W and clustal X version 2.0
M. A. Larkin et al.
BIOINFORMATICS (2007)
The Drosophila RNA methyltransferase, DmHen1, modifies germline piRNAs and single-stranded siRNAs in RISC
Michael D. Horwich et al.
CURRENT BIOLOGY (2007)
Discrete small RNA-generating loci as master regulators of transposon activity in Drosophila
Julius Brennecke et al.
CELL (2007)
A slicer-mediated mechanism for repeat-associated siRNA 5′ end formation in Drosophila
Lalith S. Gunawardane et al.
SCIENCE (2007)
Canonical sampling through velocity rescaling
Giovanni Bussi et al.
JOURNAL OF CHEMICAL PHYSICS (2007)
Comparison of multiple amber force fields and development of improved protein backbone parameters
Viktor Hornak et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2006)
Stable-isotope dimethyl labeling for quantitative proteomics
JL Hsu et al.
ANALYTICAL CHEMISTRY (2003)
Stop and go extraction tips for matrix-assisted laser desorption/ionization, nanoelectrospray, and LC/MS sample pretreatment in proteomics
J Rappsilber et al.
ANALYTICAL CHEMISTRY (2003)
Share Paper
