4.6 Review

Scientific history, biogeography, and biological traits predict presence of cryptic or overlooked species

Related references

Note: Only part of the references are listed.
Article Evolutionary Biology

Revealing the diversity of the green Eulalia (Annelida, Phyllodocidae) species complex along the European coast, with description of three new species

Marcos A. L. Teixeira et al.

Summary: The green phyllodocids Eulalia clavigera and E. viridis have been found to have different distributions and evolutionary lineages. DNA sequence analysis revealed the existence of six additional divergent lineages, including three new species: Eulalia feliciae sp. nov., Eulalia madeirensis sp. nov., and Eulalia xanthomucosa sp. nov.

ORGANISMS DIVERSITY & EVOLUTION (2023)

Review Ecology

How we study cryptic species and their biological implications: A case study from marine shelled gastropods

Caren P. Shin et al.

Summary: Methodological and biological considerations are intertwined when studying cryptic species. The frequency and definition of cryptic species in taxonomic groups are not well documented, causing ambiguity in interpreting their significance. Based on recent literature on shelled marine gastropods, this study reviews the definition and implications of cryptic species, concluding that most gastropod species are not cryptic.

ECOLOGY AND EVOLUTION (2023)

Article Zoology

From 13 to 22 in a second stroke: revisiting the European Eumida sanguinea (Phyllodocidae: Annelida) species complex

Marcos A. L. Teixeira et al.

Summary: By analyzing DNA data and morphological features in a broad sampling effort in European marine waters, researchers detected new Eumida species. The traditional morphological features failed to distinguish these new species well, emphasizing the importance of integrative taxonomy.

ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY (2022)

Editorial Material Ecology

Conclusions of low extinction risk for most species of reef-building corals are premature

Paul R. Muir et al.

NATURE ECOLOGY & EVOLUTION (2022)

Article Evolutionary Biology

Gene Flow Increases Phylogenetic Structure and Inflates Cryptic Species Estimations: A Case Study on Widespread Philippine Puddle Frogs (Occidozyga laevis)

Kin Onn Chan et al.

Summary: Genome-wide sequencing of Philippine Puddle Frogs revealed that high levels of genetic diversity are primarily a result of complex patterns of admixture, isolation-by-distance, and isolation-by-environment, rather than species divergence. Additionally, widely adopted tree- and distance-based methods tend to overestimate species diversity in the presence of gene flow.

SYSTEMATIC BIOLOGY (2022)

Article Biology

Cryptic diversity impacts model selection and macroevolutionary inferences in diversification analyses

C. Y. Utami et al.

Summary: Species persist in landscapes through ecological dynamics and proliferate at wider spatial scales through evolutionary mechanisms. The use of dated molecular phylogenies has shed new light on the presence of cryptic diversity in species-rich ecosystems and its impact on diversification models. A study on 10 lineages of freshwater fishes in Sundaland reveals that geographical isolation plays a major role in diversification.

PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2022)

Article Biodiversity Conservation

The curious and intricate case of the European Hediste diversicolor (Annelida, Nereididae) species complex, with description of two new species

Marcos A. L. Teixeira et al.

Summary: Using a multi-locus approach, this study identified five completely sorted lineages within the Hediste diversicolor morphotype and suggested possible hybridization between two sympatric lineages in the Baltic Sea. Additionally, two new species, Hediste pontii sp. nov. and Hediste astae sp. nov., were formally described, highlighting their importance for biomonitoring and other ecological studies.

SYSTEMATICS AND BIODIVERSITY (2022)

Review Ecology

The latitudinal taxonomy gradient

Benjamin G. Freeman et al.

Summary: This study highlights the importance of consistent application of criteria for defining species when interpreting large-scale datasets on the latitudinal diversity gradient. The authors provide evidence for the existence of a latitudinal taxonomy gradient and discuss its potential impacts on inferences about ecoevolutionary processes. They also offer a roadmap for mitigating taxonomic biases in biodiversity pattern studies.

TRENDS IN ECOLOGY & EVOLUTION (2021)

Article Biochemical Research Methods

ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R

Emmanuel Paradis et al.

BIOINFORMATICS (2019)

Article Evolutionary Biology

The Spectre of Too Many Species

Adam D. Leache et al.

SYSTEMATIC BIOLOGY (2019)

Article Biochemistry & Molecular Biology

Species delimitation in the presence of strong incomplete lineage sorting and hybridization: Lessons from Ophioderma (Ophiuroidea: Echinodermata)

Alexandra Anh-Thu Weber et al.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2019)

Article Marine & Freshwater Biology

Accurate population genetic measurements require cryptic species identification in corals

Elizabeth A. Sheets et al.

CORAL REEFS (2018)

Article Evolutionary Biology

Cosmopolitan polychaetes - fact or fiction? Personal and historical perspectives

Pat Hutchings et al.

INVERTEBRATE SYSTEMATICS (2018)

Review Biochemistry & Molecular Biology

Cryptic species as a window into the paradigm shift of the species concept

Cene Fiser et al.

MOLECULAR ECOLOGY (2018)

Review Ecology

Finding Evolutionary Processes Hidden in Cryptic Species

Torsten H. Struck et al.

TRENDS IN ECOLOGY & EVOLUTION (2018)

Article Ecology

Global analysis reveals that cryptic diversity is linked with habitat but not mode of life

R. Poulin et al.

JOURNAL OF EVOLUTIONARY BIOLOGY (2017)

Article Biochemistry & Molecular Biology

TimeTree: A Resource for Timelines, Timetrees, and Divergence Times

Sudhir Kumar et al.

MOLECULAR BIOLOGY AND EVOLUTION (2017)

Article Environmental Sciences

Distributional Patterns of Polychaetes Across the West Antarctic Based on DNA Barcoding and Particle Tracking Analyses

Madeleine J. Brasier et al.

FRONTIERS IN MARINE SCIENCE (2017)

Article Ecology

Strong effects of variation in taxonomic opinion on diversification analyses

Soren Faurby et al.

METHODS IN ECOLOGY AND EVOLUTION (2016)

Article Ecology

Speciation, Ecological Opportunity, and Latitude

Dolph Schluter

AMERICAN NATURALIST (2016)

Article Biology

Taxonomic distribution of cryptic diversity among metazoans: not so homogeneous after all

Gerardo Perez-Ponce de Leon et al.

BIOLOGY LETTERS (2016)

Review Biochemistry & Molecular Biology

Species are hypotheses: avoid connectivity assessments based on pillars of sand

Eric Pante et al.

MOLECULAR ECOLOGY (2015)

Review Evolutionary Biology

Cryptic polychaete diversity: a review

Arne Nygren

ZOOLOGICA SCRIPTA (2014)

Article Marine & Freshwater Biology

Assessing hidden species diversity in the coral Pocillopora damicornis from Eastern Australia

S. Schmidt-Roach et al.

CORAL REEFS (2013)

Article Parasitology

What We Don't Recognize Can Hurt Us: A Plea for Awareness About Cryptic Species

Gerardo Perez-Ponce de Leon et al.

JOURNAL OF PARASITOLOGY (2010)

Article Biodiversity Conservation

Cryptic species diversity should not be trivialised

Peter Trontelj et al.

SYSTEMATICS AND BIODIVERSITY (2009)

Article Evolutionary Biology

Cryptic animal species are homogeneously distributed among taxa and biogeographical regions

Markus Pfenninger et al.

BMC EVOLUTIONARY BIOLOGY (2007)

Review Ecology

Cryptic species as a window on diversity and conservation

David Bickford et al.

TRENDS IN ECOLOGY & EVOLUTION (2007)

Article Marine & Freshwater Biology

Patiriella pseudoexigua (Asteroidea: Asterinidae):: a cryptic species complex revealed by molecular and embryological analyses

MW Hart et al.

JOURNAL OF THE MARINE BIOLOGICAL ASSOCIATION OF THE UNITED KINGDOM (2003)

Article Biology

Analysis of comparative data using generalized estimating equations

E Paradis et al.

JOURNAL OF THEORETICAL BIOLOGY (2002)